Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS18880

Experiment: Experiment:TE2, Melon 1 Petiole 2 (TE2-S-M1-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Melon 1 Petiole 2 (TE2-S-M1-P2)
3,561,170	+				+2.8
3,561,175	+				-0.1
3,561,195	+				-1.4
3,561,196	-				-1.0
3,561,266	+				-0.4
3,561,330	+				+0.5
3,561,353	+				-0.4
3,561,395	-				+0.0
3,561,395	-				+1.6
3,561,430	+				+1.0
3,561,431	-				+1.9
3,561,431	-				-1.1
3,561,458	+				-1.0
3,561,458	+				-0.2
3,561,459	+				+1.9
3,561,460	+				-1.1
3,561,460	+				+0.1
3,561,460	+				-0.6
3,561,483	+				-0.7
3,561,483	+				-2.7
3,561,483	+				-1.1
3,561,484	-				-1.5
3,561,484	-				-0.9
3,561,690	-		LU632_RS18880	0.35	+0.4
3,561,844	-		LU632_RS18880	0.67	-1.0
3,562,043	+				+0.1
3,562,043	+				+1.7
3,562,043	+				-3.0
3,562,043	+				-1.6
3,562,043	+				+0.8
3,562,044	-				-1.2
3,562,071	+				+0.5
3,562,074	-				+1.0
3,562,080	+				+0.0
3,562,116	-				-0.0
3,562,134	+				-0.7
3,562,135	-				+0.8
3,562,159	+				-0.2
3,562,159	+				-0.9
3,562,160	-				-1.1
3,562,160	-				+1.2
3,562,215	+				+0.4
3,562,216	-				-0.3
3,562,249	+				+0.8
3,562,250	-				-0.6
3,562,250	-				-1.8
3,562,282	+				-0.2
3,562,540	+	proY	LU632_RS18885	0.18	-1.1
3,562,541	-	proY	LU632_RS18885	0.18	+0.3
3,562,541	-	proY	LU632_RS18885	0.18	-0.5
3,562,612	+	proY	LU632_RS18885	0.23	-2.5
3,562,612	-	proY	LU632_RS18885	0.23	-1.1
3,562,738	+	proY	LU632_RS18885	0.32	+0.2
3,562,738	+	proY	LU632_RS18885	0.32	+0.1
3,562,739	-	proY	LU632_RS18885	0.32	+1.2
3,562,754	+	proY	LU632_RS18885	0.33	+0.2
3,562,832	-	proY	LU632_RS18885	0.39	+1.8
3,562,887	+	proY	LU632_RS18885	0.43	+1.2
3,562,898	-	proY	LU632_RS18885	0.44	+1.2
3,562,920	+	proY	LU632_RS18885	0.46	+0.3
3,562,952	-	proY	LU632_RS18885	0.48	-0.3