Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS16805

Experiment: Experiment:TE2, Melon 1 Petiole 2 (TE2-S-M1-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Melon 1 Petiole 2 (TE2-S-M1-P2)
3,163,267	+				+0.1
3,163,395	-				+1.1
3,163,396	+				+0.8
3,163,397	-				-2.0
3,163,406	+				+1.0
3,163,407	-				+0.9
3,163,428	+				-0.7
3,163,428	+				+2.9
3,163,429	-				+1.1
3,163,432	+				-0.5
3,163,432	+				+0.4
3,163,432	+				+2.0
3,163,433	-				-0.9
3,163,433	-				+0.9
3,163,433	-				-2.7
3,163,602	+		LU632_RS16795	0.52	-0.2
3,163,603	-		LU632_RS16795	0.52	+0.4
3,163,835	+				-0.7
3,163,904	-				-0.3
3,163,906	+				-0.9
3,163,907	-				+0.5
3,163,981	+				-0.5
3,164,003	-				+1.4
3,164,019	-				-0.5
3,164,022	-				+0.6
3,164,167	+	nrdH	LU632_RS16800	0.65	-0.7
3,164,172	-	nrdH	LU632_RS16800	0.67	+1.1
3,164,267	+				+1.2
3,164,375	+	nrdI	LU632_RS16805	0.28	+2.7
3,164,376	-	nrdI	LU632_RS16805	0.28	-2.3
3,164,378	-	nrdI	LU632_RS16805	0.29	+0.8
3,164,396	+	nrdI	LU632_RS16805	0.33	+0.4
3,164,397	-	nrdI	LU632_RS16805	0.33	+1.9
3,164,472	+	nrdI	LU632_RS16805	0.51	+0.8
3,164,526	+	nrdI	LU632_RS16805	0.64	+0.7
3,164,526	+	nrdI	LU632_RS16805	0.64	+0.1
3,164,584	-	nrdI	LU632_RS16805	0.78	+1.5
3,164,613	+	nrdI	LU632_RS16805	0.85	+2.4
3,164,613	+	nrdI	LU632_RS16805	0.85	+0.0
3,164,613	+	nrdI	LU632_RS16805	0.85	-0.6
3,164,614	-	nrdI	LU632_RS16805	0.85	-0.3
3,164,614	-	nrdI	LU632_RS16805	0.85	+0.9
3,164,614	-	nrdI	LU632_RS16805	0.85	+0.3
3,164,771	-				+0.4
3,164,771	-				+1.2
3,164,778	-				+1.1
3,164,786	+				+1.0
3,164,787	-				-0.0
3,164,787	-				-0.5
3,164,787	-				-0.5
3,164,855	-				-0.5
3,164,871	+				+0.7
3,164,872	-				+1.1
3,164,965	+	nrdE	LU632_RS16810	0.13	-0.5
3,164,968	-	nrdE	LU632_RS16810	0.13	+3.4
3,164,975	-	nrdE	LU632_RS16810	0.13	+0.3
3,165,004	+	nrdE	LU632_RS16810	0.14	+1.1
3,165,303	+	nrdE	LU632_RS16810	0.29	+1.5
3,165,304	-	nrdE	LU632_RS16810	0.29	+0.7
3,165,383	+	nrdE	LU632_RS16810	0.33	-1.7
3,165,490	-	nrdE	LU632_RS16810	0.38	-0.5
3,165,490	-	nrdE	LU632_RS16810	0.38	-1.7
3,165,592	+	nrdE	LU632_RS16810	0.43	+0.1
3,165,593	-	nrdE	LU632_RS16810	0.43	+1.0
3,165,593	-	nrdE	LU632_RS16810	0.43	-0.6
3,165,632	+	nrdE	LU632_RS16810	0.45	-2.0
3,165,642	-	nrdE	LU632_RS16810	0.45	+0.6
3,165,642	-	nrdE	LU632_RS16810	0.45	-2.1
3,165,673	-	nrdE	LU632_RS16810	0.47	+1.8