Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS16500

Experiment: Experiment:TE2, Melon 1 Petiole 2 (TE2-S-M1-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Melon 1 Petiole 2 (TE2-S-M1-P2)
3,123,931	+				+1.1
3,123,933	+				-2.8
3,123,983	-				-1.8
3,124,031	+				-2.3
3,124,091	+				-1.4
3,124,099	-				+0.6
3,124,105	+				-0.5
3,124,116	+				-2.0
3,124,136	-				+1.0
3,124,147	+				+1.1
3,124,168	+				-1.4
3,124,169	-				-0.3
3,124,208	-				+0.1
3,124,250	+				+0.0
3,124,250	+				+0.4
3,124,250	+				-0.4
3,124,250	+				+0.6
3,124,251	-				+0.3
3,124,273	+				-0.1
3,124,324	+				+0.6
3,124,325	-				+0.1
3,124,396	-				+0.2
3,124,403	+				+0.2
3,124,544	-				-1.0
3,124,544	-				+1.9
3,124,553	-				+0.2
3,124,553	-				-0.0
3,124,575	+				-0.4
3,124,606	+				-2.3
3,124,606	+				+0.3
3,124,623	+				-1.9
3,124,624	-				+0.1
3,124,662	-				+0.3
3,124,672	-				-1.2
3,124,737	+				+1.5
3,124,773	+				+0.6
3,124,814	-				+1.3
3,124,898	+				+1.3
3,124,899	-				+0.6
3,124,902	-				+0.1
3,124,968	+				+2.1
3,124,971	-				-0.4
3,124,971	-				-1.4
3,125,040	+		LU632_RS16500	0.12	+0.6
3,125,080	+		LU632_RS16500	0.14	-2.5
3,125,080	+		LU632_RS16500	0.14	-0.3
3,125,081	-		LU632_RS16500	0.14	+0.5
3,125,112	-		LU632_RS16500	0.16	+1.0
3,125,140	+		LU632_RS16500	0.17	+0.6
3,125,143	+		LU632_RS16500	0.17	-0.2
3,125,144	-		LU632_RS16500	0.17	+0.3
3,125,144	-		LU632_RS16500	0.17	-0.9
3,125,146	+		LU632_RS16500	0.17	+0.8
3,125,225	-		LU632_RS16500	0.21	-0.2
3,125,233	+		LU632_RS16500	0.21	-1.2
3,125,356	+		LU632_RS16500	0.27	+0.4
3,125,362	+		LU632_RS16500	0.28	-0.3
3,125,401	+		LU632_RS16500	0.29	+1.7
3,125,519	+		LU632_RS16500	0.35	+2.1
3,125,636	+		LU632_RS16500	0.41	-0.4
3,125,714	-		LU632_RS16500	0.44	+0.1
3,125,744	+		LU632_RS16500	0.46	-0.8
3,125,744	+		LU632_RS16500	0.46	-1.9
3,125,926	-		LU632_RS16500	0.54	+0.3
3,125,926	-		LU632_RS16500	0.54	+0.7
3,126,207	-		LU632_RS16500	0.68	+0.3
3,126,301	+		LU632_RS16500	0.72	-0.2
3,126,368	+		LU632_RS16500	0.75	-0.9
3,126,368	+		LU632_RS16500	0.75	-0.9
3,126,375	-		LU632_RS16500	0.76	+3.5
3,126,418	+		LU632_RS16500	0.78	+0.1
3,126,468	-		LU632_RS16500	0.80	+1.0
3,126,610	+		LU632_RS16500	0.87	+2.1
3,126,611	-		LU632_RS16500	0.87	+1.3
3,126,611	-		LU632_RS16500	0.87	+0.2
3,126,686	+				+0.0
3,126,686	+				-1.2
3,126,687	-				+0.1
3,126,752	+				+0.7
3,126,753	-				+1.2
3,126,779	+				+2.1
3,126,780	-				+0.1
3,126,780	-				+0.8
3,126,780	-				+1.5
3,126,781	+				+0.9
3,126,781	+				-0.8
3,126,857	-				-1.2
3,126,857	-				+0.1
3,126,857	-				-0.4
3,126,857	-				-0.2
3,126,857	-				+0.2
3,126,895	+				+0.1
3,126,895	+				+0.3
3,126,896	-				-0.2
3,126,938	-				-0.3
3,126,948	+				-1.1
3,126,951	+				-1.4
3,126,952	-				+0.2
3,126,952	-				-0.1
3,127,120	+		LU632_RS16505	0.18	-0.9
3,127,121	-		LU632_RS16505	0.18	-1.2
3,127,266	+		LU632_RS16505	0.29	+3.7
3,127,452	+		LU632_RS16505	0.44	-1.1
3,127,453	-		LU632_RS16505	0.44	+0.5
3,127,453	-		LU632_RS16505	0.44	+0.3
3,127,466	-		LU632_RS16505	0.45	+1.1
3,127,503	-		LU632_RS16505	0.48	-2.3
3,127,670	+		LU632_RS16505	0.61	+4.1
3,127,670	+		LU632_RS16505	0.61	+0.3
3,127,671	-		LU632_RS16505	0.61	+1.6