Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS14780

Experiment: Experiment:TE2, Melon 1 Petiole 2 (TE2-S-M1-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Melon 1 Petiole 2 (TE2-S-M1-P2)
2,807,934	-				-1.6
2,807,934	-				+0.6
2,807,961	+				-3.2
2,807,967	+				-0.7
2,807,986	+				-2.0
2,807,986	+				-2.4
2,807,987	-				-1.0
2,807,987	-				-1.5
2,808,096	+		LU632_RS14770	0.39	-1.3
2,808,097	-		LU632_RS14770	0.39	-0.3
2,808,112	-		LU632_RS14770	0.44	+0.4
2,808,116	-		LU632_RS14770	0.45	+0.4
2,808,208	+		LU632_RS14770	0.71	+1.0
2,808,209	-		LU632_RS14770	0.72	-0.8
2,808,209	-		LU632_RS14770	0.72	+1.4
2,808,209	-		LU632_RS14770	0.72	-0.9
2,808,209	-		LU632_RS14770	0.72	+1.8
2,808,263	-		LU632_RS14770	0.87	-1.9
2,808,320	+				-2.0
2,808,351	+				+0.0
2,808,449	+	hinT	LU632_RS14775	0.26	+0.6
2,808,573	-	hinT	LU632_RS14775	0.62	-2.0
2,808,653	+	hinT	LU632_RS14775	0.84	-1.4
2,808,654	-	hinT	LU632_RS14775	0.85	+0.0
2,808,678	-				-0.0
2,808,683	+				-0.5
2,808,831	+				-0.3
2,808,831	+				+0.7
2,808,832	-				-1.3
2,808,900	-				-0.4
2,808,914	+				-1.1
2,808,914	+				+0.8
2,808,914	+				-1.6
2,808,915	-				-0.5
2,808,924	+				+1.0
2,809,098	+	ptsG	LU632_RS14780	0.14	+1.2
2,809,189	-	ptsG	LU632_RS14780	0.20	+0.2
2,809,207	+	ptsG	LU632_RS14780	0.22	+0.1
2,809,208	-	ptsG	LU632_RS14780	0.22	+0.8
2,809,226	+	ptsG	LU632_RS14780	0.23	+0.1
2,809,292	-	ptsG	LU632_RS14780	0.27	-0.2
2,809,292	-	ptsG	LU632_RS14780	0.27	+0.5
2,809,354	-	ptsG	LU632_RS14780	0.32	+0.0
2,809,419	+	ptsG	LU632_RS14780	0.36	+0.4
2,809,420	-	ptsG	LU632_RS14780	0.36	-2.2
2,809,529	-	ptsG	LU632_RS14780	0.44	-1.3
2,809,529	-	ptsG	LU632_RS14780	0.44	+1.0
2,809,530	+	ptsG	LU632_RS14780	0.44	-1.3
2,809,530	+	ptsG	LU632_RS14780	0.44	-3.0
2,809,530	+	ptsG	LU632_RS14780	0.44	+0.4
2,809,531	-	ptsG	LU632_RS14780	0.44	-1.8
2,809,531	-	ptsG	LU632_RS14780	0.44	+0.3
2,809,556	+	ptsG	LU632_RS14780	0.46	-0.6
2,809,588	-	ptsG	LU632_RS14780	0.48	+0.3
2,809,613	+	ptsG	LU632_RS14780	0.50	+1.8
2,809,613	+	ptsG	LU632_RS14780	0.50	-0.9
2,809,656	+	ptsG	LU632_RS14780	0.53	-1.0
2,809,695	+	ptsG	LU632_RS14780	0.56	-1.2
2,809,740	-	ptsG	LU632_RS14780	0.59	+2.0
2,809,742	-	ptsG	LU632_RS14780	0.59	-0.2
2,809,742	-	ptsG	LU632_RS14780	0.59	-1.2
2,809,866	+	ptsG	LU632_RS14780	0.68	-0.1
2,809,925	+	ptsG	LU632_RS14780	0.72	-0.6
2,809,925	+	ptsG	LU632_RS14780	0.72	+0.0
2,809,976	-	ptsG	LU632_RS14780	0.75	-1.1
2,809,979	-	ptsG	LU632_RS14780	0.75	-1.3
2,810,067	+	ptsG	LU632_RS14780	0.82	+0.4
2,810,332	-				+0.7
2,810,337	+				-1.7
2,810,413	-				+0.8
2,810,522	+				+0.3
2,810,531	+				+0.6
2,810,532	-				-0.3
2,810,557	-				+1.0
2,810,563	-				+2.6
2,810,572	+				-2.4
2,810,572	+				-0.5
2,810,572	+				-1.6
2,810,693	+		LU632_RS14785	0.13	-1.8
2,810,693	+		LU632_RS14785	0.13	+0.8
2,810,693	+		LU632_RS14785	0.13	-1.3
2,810,694	-		LU632_RS14785	0.13	+0.0
2,810,695	+		LU632_RS14785	0.13	+0.3
2,810,695	+		LU632_RS14785	0.13	-0.8
2,810,696	-		LU632_RS14785	0.13	-0.6
2,810,696	-		LU632_RS14785	0.13	-0.8
2,810,696	-		LU632_RS14785	0.13	-1.2
2,810,716	+		LU632_RS14785	0.16	+2.0
2,810,717	-		LU632_RS14785	0.16	+0.6
2,810,762	-		LU632_RS14785	0.22	+0.7
2,810,782	-		LU632_RS14785	0.24	-0.4
2,810,803	+		LU632_RS14785	0.27	+1.0
2,810,803	+		LU632_RS14785	0.27	+0.8
2,810,803	+		LU632_RS14785	0.27	-1.9
2,810,803	+		LU632_RS14785	0.27	-0.6
2,810,804	-		LU632_RS14785	0.27	-1.0
2,810,864	+		LU632_RS14785	0.35	+0.2
2,810,866	+		LU632_RS14785	0.35	+1.8
2,810,973	-		LU632_RS14785	0.48	-0.1
2,811,035	+		LU632_RS14785	0.56	-0.5
2,811,036	-		LU632_RS14785	0.56	+0.3
2,811,088	+		LU632_RS14785	0.63	+0.9
2,811,177	+		LU632_RS14785	0.74	+2.3
2,811,178	-		LU632_RS14785	0.74	-2.0
2,811,199	+		LU632_RS14785	0.77	+0.0
2,811,199	+		LU632_RS14785	0.77	-0.6
2,811,200	-		LU632_RS14785	0.77	+0.9
2,811,200	-		LU632_RS14785	0.77	-2.0
2,811,244	+		LU632_RS14785	0.82	-0.6
2,811,276	-		LU632_RS14785	0.86	-0.2
2,811,309	+				+0.0
2,811,310	-				-1.4