Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS13910

Experiment: Experiment:TE2, Melon 1 Petiole 2 (TE2-S-M1-P2)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS13910 and LU632_RS13915 are separated by 149 nucleotides LU632_RS13910: LU632_RS13910 - IS3 family transposase, at 2,666,399 to 2,667,519 _RS13910 LU632_RS13915: LU632_RS13915 - IS1 family transposase, at 2,667,669 to 2,668,342 _RS13915 Position (kb) 2666 2667 2668Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2665.402 kb on + strandat 2665.402 kb on + strandat 2665.403 kb on - strandat 2665.445 kb on + strandat 2665.445 kb on + strandat 2665.466 kb on + strandat 2665.467 kb on - strandat 2665.471 kb on - strandat 2665.619 kb on + strandat 2665.620 kb on - strandat 2665.705 kb on + strandat 2665.755 kb on + strandat 2665.813 kb on + strandat 2665.826 kb on + strandat 2665.871 kb on + strandat 2666.052 kb on + strandat 2666.053 kb on - strandat 2666.053 kb on - strandat 2666.074 kb on + strandat 2666.075 kb on - strandat 2666.202 kb on - strandat 2666.204 kb on + strandat 2666.236 kb on + strandat 2666.236 kb on + strandat 2666.240 kb on + strandat 2666.258 kb on - strandat 2666.271 kb on - strandat 2666.317 kb on + strandat 2666.317 kb on + strandat 2666.348 kb on - strandat 2667.530 kb on + strandat 2667.558 kb on + strandat 2667.563 kb on + strandat 2667.563 kb on + strandat 2667.564 kb on - strandat 2667.564 kb on - strandat 2667.564 kb on - strandat 2667.571 kb on - strandat 2667.591 kb on + strandat 2668.400 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 1 Petiole 2 (TE2-S-M1-P2)
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2,665,402 + -1.8
2,665,402 + -0.6
2,665,403 - -1.3
2,665,445 + +0.4
2,665,445 + +2.1
2,665,466 + -0.9
2,665,467 - -0.2
2,665,471 - -1.0
2,665,619 + +1.0
2,665,620 - +0.6
2,665,705 + +0.7
2,665,755 + +1.0
2,665,813 + -1.4
2,665,826 + +1.0
2,665,871 + -2.2
2,666,052 + -3.2
2,666,053 - +1.9
2,666,053 - +0.4
2,666,074 + +0.5
2,666,075 - +1.2
2,666,202 - -2.1
2,666,204 + +0.3
2,666,236 + -0.2
2,666,236 + -0.2
2,666,240 + -1.8
2,666,258 - -0.8
2,666,271 - +0.0
2,666,317 + -1.4
2,666,317 + +1.2
2,666,348 - -0.0
2,667,530 + -0.6
2,667,558 + +2.8
2,667,563 + +0.4
2,667,563 + -0.6
2,667,564 - -0.1
2,667,564 - -0.9
2,667,564 - +0.6
2,667,571 - +0.3
2,667,591 + -0.1
2,668,400 + +0.8

Or see this region's nucleotide sequence