Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS12675

Experiment: Experiment:TE2, Melon 1 Petiole 2 (TE2-S-M1-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Melon 1 Petiole 2 (TE2-S-M1-P2)
2,410,345	+				-2.4
2,410,345	+				+1.6
2,410,449	+		LU632_RS12665	0.13	+0.9
2,410,449	+		LU632_RS12665	0.13	-0.8
2,410,449	+		LU632_RS12665	0.13	+0.9
2,410,450	+		LU632_RS12665	0.13	+0.4
2,410,669	+		LU632_RS12665	0.80	-1.4
2,410,669	+		LU632_RS12665	0.80	-1.6
2,410,720	-				+1.6
2,410,788	-		LU632_RS12670	0.24	+1.2
2,410,792	-		LU632_RS12670	0.26	+0.3
2,410,796	+		LU632_RS12670	0.28	+0.3
2,410,829	+		LU632_RS12670	0.46	-2.2
2,410,829	+		LU632_RS12670	0.46	+0.2
2,410,830	-		LU632_RS12670	0.46	+0.3
2,410,830	-		LU632_RS12670	0.46	+1.6
2,410,832	+		LU632_RS12670	0.47	+0.9
2,410,833	-		LU632_RS12670	0.48	+1.0
2,410,896	+		LU632_RS12670	0.81	-0.1
2,410,919	+				-0.7
2,410,984	+				+0.5
2,411,046	+				-1.8
2,411,047	-				-2.7
2,411,047	-				-0.6
2,411,165	+				+0.2
2,411,166	-				+0.1
2,411,166	-				+0.2
2,411,202	+		LU632_RS12675	0.11	-1.6
2,411,203	-		LU632_RS12675	0.11	+0.9
2,411,203	-		LU632_RS12675	0.11	+1.4
2,411,265	+		LU632_RS12675	0.13	+0.5
2,411,266	-		LU632_RS12675	0.13	-0.0
2,411,281	+		LU632_RS12675	0.14	+0.8
2,411,329	-		LU632_RS12675	0.16	+0.6
2,411,359	+		LU632_RS12675	0.17	+0.9
2,411,382	+		LU632_RS12675	0.18	+1.5
2,411,382	+		LU632_RS12675	0.18	-4.4
2,411,383	-		LU632_RS12675	0.18	-0.7
2,411,525	-		LU632_RS12675	0.23	-0.3
2,411,550	+		LU632_RS12675	0.24	+0.8
2,411,563	+		LU632_RS12675	0.25	-0.1
2,411,606	+		LU632_RS12675	0.26	-2.6
2,411,606	+		LU632_RS12675	0.26	-1.1
2,411,606	+		LU632_RS12675	0.26	+0.3
2,411,673	+		LU632_RS12675	0.29	-1.1
2,412,023	-		LU632_RS12675	0.42	+0.0
2,412,085	+		LU632_RS12675	0.44	+0.9
2,412,085	+		LU632_RS12675	0.44	-0.7
2,412,355	+		LU632_RS12675	0.55	+1.2
2,412,356	-		LU632_RS12675	0.55	-0.2
2,412,356	-		LU632_RS12675	0.55	+0.1
2,412,407	-		LU632_RS12675	0.57	+0.3
2,412,424	+		LU632_RS12675	0.57	+0.3
2,412,424	+		LU632_RS12675	0.57	-2.3
2,412,424	+		LU632_RS12675	0.57	-0.7
2,412,425	-		LU632_RS12675	0.57	+1.5
2,412,425	-		LU632_RS12675	0.57	-0.3
2,412,615	+		LU632_RS12675	0.65	-0.9
2,412,645	+		LU632_RS12675	0.66	-0.7
2,412,645	+		LU632_RS12675	0.66	-0.4
2,412,649	+		LU632_RS12675	0.66	-0.1
2,412,649	+		LU632_RS12675	0.66	-1.4
2,412,650	-		LU632_RS12675	0.66	+0.4
2,412,660	+		LU632_RS12675	0.66	-0.5
2,412,661	-		LU632_RS12675	0.66	+0.3
2,412,745	-		LU632_RS12675	0.70	+2.4
2,412,747	-		LU632_RS12675	0.70	+0.2
2,412,747	-		LU632_RS12675	0.70	-0.9
2,412,747	-		LU632_RS12675	0.70	-1.2
2,412,783	+		LU632_RS12675	0.71	-0.2
2,412,811	+		LU632_RS12675	0.72	+0.5
2,412,811	+		LU632_RS12675	0.72	+0.9
2,412,901	-		LU632_RS12675	0.75	+0.9
2,412,909	+		LU632_RS12675	0.76	+0.9
2,412,992	-		LU632_RS12675	0.79	-0.3
2,413,024	-		LU632_RS12675	0.80	-0.6
2,413,026	+		LU632_RS12675	0.80	-1.1
2,413,026	+		LU632_RS12675	0.80	+3.4
2,413,053	+		LU632_RS12675	0.81	-0.6
2,413,150	-		LU632_RS12675	0.85	-0.7
2,413,150	-		LU632_RS12675	0.85	+1.5
2,413,181	-		LU632_RS12675	0.86	+0.1
2,413,185	+		LU632_RS12675	0.86	+0.3
2,413,185	+		LU632_RS12675	0.86	+0.4
2,413,185	+		LU632_RS12675	0.86	-0.4
2,413,186	-		LU632_RS12675	0.86	+0.6
2,413,186	-		LU632_RS12675	0.86	+0.4
2,413,219	-		LU632_RS12675	0.88	-0.1
2,413,376	-				+2.1
2,413,404	+				+0.9
2,413,404	+				-1.0
2,413,405	-				-0.4
2,413,408	+				-0.4
2,413,422	+				-0.3
2,413,422	+				-0.1
2,413,426	-				-0.1
2,413,438	+				+0.2
2,413,438	+				+1.1
2,413,439	-				+1.4
2,413,439	-				+0.8
2,413,477	+				-1.5
2,413,482	-				-0.1
2,413,576	+				+0.4
2,413,618	+				+0.6
2,413,681	+				-1.0
2,413,688	-				-0.9
2,413,876	+		LU632_RS12680	0.32	-0.5
2,413,880	+		LU632_RS12680	0.33	+2.0
2,413,880	+		LU632_RS12680	0.33	-1.1
2,413,881	-		LU632_RS12680	0.34	+0.1
2,413,895	+		LU632_RS12680	0.39	+0.8
2,413,911	+		LU632_RS12680	0.45	-0.1
2,413,968	-		LU632_RS12680	0.67	-0.7
2,414,065	-		LU632_RS12685	0.46	+1.1
2,414,093	-		LU632_RS12685	0.60	-1.4
2,414,152	-		LU632_RS12685	0.90	-0.7
2,414,291	+		LU632_RS12690	0.17	+0.6
2,414,292	-		LU632_RS12690	0.17	-0.2
2,414,343	+		LU632_RS12690	0.26	-0.3
2,414,485	-		LU632_RS12690	0.52	+0.0