Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS12195

Experiment: Experiment:TE2, Melon 1 Petiole 2 (TE2-S-M1-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Melon 1 Petiole 2 (TE2-S-M1-P2)
2,311,395	-				-0.1
2,311,460	+				+1.0
2,311,464	+				+0.3
2,311,465	-				-0.0
2,311,465	-				-0.7
2,311,469	-				+0.5
2,311,504	+				-0.2
2,311,504	+				+1.5
2,311,504	+				+1.5
2,311,505	-				-0.7
2,311,507	+				-1.5
2,311,510	-				+0.2
2,311,600	+				+0.3
2,311,600	+				-0.2
2,311,601	-				-0.6
2,311,620	+				-1.5
2,311,620	+				-0.4
2,311,687	+		LU632_RS12190	0.16	+0.7
2,311,691	-		LU632_RS12190	0.16	+0.3
2,311,740	-		LU632_RS12190	0.24	+0.3
2,311,835	+		LU632_RS12190	0.39	-1.9
2,311,835	+		LU632_RS12190	0.39	-1.6
2,311,836	-		LU632_RS12190	0.39	-0.6
2,311,916	+		LU632_RS12190	0.52	+0.0
2,311,916	+		LU632_RS12190	0.52	+0.3
2,311,916	+		LU632_RS12190	0.52	+0.9
2,311,916	+		LU632_RS12190	0.52	-3.5
2,311,916	+		LU632_RS12190	0.52	+0.9
2,311,917	-		LU632_RS12190	0.52	+0.6
2,311,917	-		LU632_RS12190	0.52	+0.6
2,311,917	-		LU632_RS12190	0.52	+0.5
2,311,917	-		LU632_RS12190	0.52	+0.1
2,311,917	-		LU632_RS12190	0.52	+0.7
2,312,030	+		LU632_RS12190	0.70	+0.1
2,312,031	-		LU632_RS12190	0.70	-0.0
2,312,056	-		LU632_RS12190	0.74	-0.1
2,312,056	-		LU632_RS12190	0.74	-1.5
2,312,123	+		LU632_RS12190	0.85	-1.9
2,312,123	+		LU632_RS12190	0.85	+0.7
2,312,203	+				-1.1
2,312,270	+				+0.1
2,312,323	+				+1.9
2,312,454	+				+0.1
2,312,455	-				-0.8
2,312,455	-				-1.1
2,312,460	-				+0.5
2,312,460	-				-1.5
2,312,475	-				-1.5
2,312,500	+				-0.8
2,312,500	+				-0.4
2,312,501	-				+0.2
2,312,501	-				+2.0
2,312,634	+				+0.5
2,312,712	-		LU632_RS12195	0.11	-0.1
2,312,748	+		LU632_RS12195	0.12	-0.9
2,312,749	-		LU632_RS12195	0.12	-2.3
2,312,762	-		LU632_RS12195	0.13	+0.2
2,312,764	+		LU632_RS12195	0.13	+1.3
2,312,765	-		LU632_RS12195	0.13	+0.9
2,312,823	+		LU632_RS12195	0.15	-0.7
2,312,882	-		LU632_RS12195	0.17	+0.1
2,312,976	+		LU632_RS12195	0.20	-0.6
2,313,046	+		LU632_RS12195	0.22	-0.4
2,313,079	+		LU632_RS12195	0.23	-2.0
2,313,079	+		LU632_RS12195	0.23	+2.5
2,313,099	+		LU632_RS12195	0.24	-1.7
2,313,099	+		LU632_RS12195	0.24	-0.7
2,313,109	+		LU632_RS12195	0.24	+0.9
2,313,119	-		LU632_RS12195	0.25	-0.2
2,313,143	-		LU632_RS12195	0.25	+0.1
2,313,143	-		LU632_RS12195	0.25	-1.9
2,313,229	-		LU632_RS12195	0.28	-2.1
2,313,374	+		LU632_RS12195	0.33	-0.0
2,313,375	-		LU632_RS12195	0.33	-1.1
2,313,375	-		LU632_RS12195	0.33	+2.8
2,313,375	-		LU632_RS12195	0.33	-0.7
2,313,433	+		LU632_RS12195	0.35	+1.0
2,313,526	+		LU632_RS12195	0.38	+1.2
2,313,529	+		LU632_RS12195	0.38	+0.1
2,313,529	+		LU632_RS12195	0.38	-0.2
2,313,530	-		LU632_RS12195	0.38	-0.3
2,313,542	+		LU632_RS12195	0.39	-1.7
2,313,542	+		LU632_RS12195	0.39	-0.5
2,313,560	+		LU632_RS12195	0.39	-2.5
2,313,560	+		LU632_RS12195	0.39	-1.1
2,313,585	+		LU632_RS12195	0.40	-1.5
2,313,646	+		LU632_RS12195	0.42	+0.1
2,313,647	-		LU632_RS12195	0.42	-0.5
2,313,650	+		LU632_RS12195	0.43	-0.3
2,313,727	+		LU632_RS12195	0.45	-1.3
2,313,728	-		LU632_RS12195	0.45	+1.0
2,313,728	-		LU632_RS12195	0.45	-0.1
2,313,753	-		LU632_RS12195	0.46	+0.1
2,313,756	-		LU632_RS12195	0.46	-3.1
2,313,904	-		LU632_RS12195	0.51	-1.7
2,313,923	+		LU632_RS12195	0.52	-2.1
2,313,923	+		LU632_RS12195	0.52	-0.9
2,313,937	+		LU632_RS12195	0.52	-2.7
2,314,026	+		LU632_RS12195	0.55	+0.9
2,314,026	+		LU632_RS12195	0.55	+0.1
2,314,027	-		LU632_RS12195	0.55	+1.9
2,314,089	-		LU632_RS12195	0.57	-0.7
2,314,098	+		LU632_RS12195	0.58	-0.1
2,314,171	+		LU632_RS12195	0.60	+0.2
2,314,172	-		LU632_RS12195	0.60	-0.1
2,314,173	+		LU632_RS12195	0.60	-1.3
2,314,301	-		LU632_RS12195	0.64	-0.7
2,314,313	+		LU632_RS12195	0.65	-1.9
2,314,313	+		LU632_RS12195	0.65	-2.2
2,314,314	-		LU632_RS12195	0.65	+0.7
2,314,314	-		LU632_RS12195	0.65	-0.1
2,314,332	-		LU632_RS12195	0.65	-0.5
2,314,487	+		LU632_RS12195	0.71	+0.9
2,314,487	+		LU632_RS12195	0.71	+0.7
2,314,488	-		LU632_RS12195	0.71	+0.4
2,314,578	+		LU632_RS12195	0.74	-0.1
2,314,610	+		LU632_RS12195	0.75	+0.1
2,314,710	+		LU632_RS12195	0.78	+0.5
2,314,714	+		LU632_RS12195	0.78	+0.7
2,314,715	-		LU632_RS12195	0.78	+1.0
2,314,759	-		LU632_RS12195	0.80	-0.3
2,314,945	+		LU632_RS12195	0.86	-0.0
2,314,946	-		LU632_RS12195	0.86	-0.3
2,315,125	+				-0.1
2,315,125	+				+0.1
2,315,126	-				-0.4
2,315,147	+				-1.8
2,315,147	+				-0.2
2,315,148	-				+0.9
2,315,259	-				+0.1
2,315,259	-				-1.7
2,315,259	-				+0.7
2,315,259	-				-0.6
2,315,261	-				+0.1
2,315,317	+				-2.5
2,315,318	-				-0.7
2,315,417	-				+0.2
2,315,475	-				+0.6
2,315,480	+				-0.8
2,315,503	+				-0.7
2,315,504	-				+0.4
2,315,504	-				-1.7
2,315,504	-				+0.3
2,315,557	-				-2.6
2,315,632	+				-3.6
2,315,632	+				+2.6
2,315,635	+				-1.1
2,315,635	+				+0.1
2,315,643	+				+0.5
2,315,643	+				+0.9
2,315,644	-				+0.9
2,315,658	+				-2.5
2,315,704	-		LU632_RS12200	0.22	+0.6
2,315,805	-		LU632_RS12200	0.63	+1.2
2,315,922	-				+0.8
2,315,933	+				-0.1
2,315,933	+				-0.4
2,315,933	+				+2.1
2,315,934	-				-3.3
2,315,972	-				+1.1
2,315,989	-				-1.1
2,316,016	+				-3.2
2,316,016	+				+1.6
2,316,017	-				+0.9
2,316,071	+		LU632_RS12205	0.11	-0.7
2,316,156	-		LU632_RS12205	0.18	-0.0
2,316,156	-		LU632_RS12205	0.18	+0.9
2,316,162	-		LU632_RS12205	0.18	+1.0
2,316,166	+		LU632_RS12205	0.19	-0.3
2,316,167	-		LU632_RS12205	0.19	+0.3
2,316,232	-		LU632_RS12205	0.24	-1.7
2,316,232	-		LU632_RS12205	0.24	-2.6
2,316,319	+		LU632_RS12205	0.30	-1.5
2,316,352	-		LU632_RS12205	0.33	-0.8
2,316,352	-		LU632_RS12205	0.33	+0.9