Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS09960

Experiment: Experiment:TE2, Melon 1 Petiole 2 (TE2-S-M1-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Melon 1 Petiole 2 (TE2-S-M1-P2)
1,901,555	+	pyrD	LU632_RS09955	0.21	-2.3
1,901,555	+	pyrD	LU632_RS09955	0.21	-1.5
1,901,556	-	pyrD	LU632_RS09955	0.21	-1.7
1,901,631	-	pyrD	LU632_RS09955	0.28	-3.5
1,901,634	-	pyrD	LU632_RS09955	0.28	-3.6
1,901,749	+	pyrD	LU632_RS09955	0.40	-2.8
1,901,750	-	pyrD	LU632_RS09955	0.40	-1.7
1,901,753	-	pyrD	LU632_RS09955	0.40	-3.2
1,901,780	+	pyrD	LU632_RS09955	0.43	+0.1
1,901,780	+	pyrD	LU632_RS09955	0.43	-2.4
1,901,781	-	pyrD	LU632_RS09955	0.43	-4.3
1,901,896	+	pyrD	LU632_RS09955	0.54	-3.4
1,901,896	+	pyrD	LU632_RS09955	0.54	-2.4
1,901,896	+	pyrD	LU632_RS09955	0.54	-3.8
1,901,972	+	pyrD	LU632_RS09955	0.62	-1.7
1,901,973	-	pyrD	LU632_RS09955	0.62	-3.9
1,901,976	+	pyrD	LU632_RS09955	0.62	-4.0
1,901,977	-	pyrD	LU632_RS09955	0.62	-1.9
1,902,056	+	pyrD	LU632_RS09955	0.70	-2.7
1,902,059	+	pyrD	LU632_RS09955	0.71	-1.9
1,902,059	+	pyrD	LU632_RS09955	0.71	-3.6
1,902,084	-	pyrD	LU632_RS09955	0.73	-4.3
1,902,086	+	pyrD	LU632_RS09955	0.73	-4.3
1,902,086	+	pyrD	LU632_RS09955	0.73	-1.5
1,902,086	+	pyrD	LU632_RS09955	0.73	-2.3
1,902,087	-	pyrD	LU632_RS09955	0.73	-2.5
1,902,369	+				+0.0
1,902,412	+				-0.2
1,902,435	+				+0.9
1,902,435	+				+0.2
1,902,436	-				+0.5
1,902,436	-				-0.4
1,902,574	+		LU632_RS09960	0.10	+1.9
1,902,583	-		LU632_RS09960	0.12	+0.6
1,902,790	+		LU632_RS09960	0.50	-1.0
1,902,790	+		LU632_RS09960	0.50	+1.0
1,902,791	-		LU632_RS09960	0.50	+0.7
1,902,791	-		LU632_RS09960	0.50	+2.1
1,902,791	-		LU632_RS09960	0.50	-1.3
1,902,812	-		LU632_RS09960	0.54	-1.5
1,902,930	+		LU632_RS09960	0.75	+5.9
1,902,930	+		LU632_RS09960	0.75	+0.3
1,902,973	+		LU632_RS09960	0.83	+0.6
1,902,973	+		LU632_RS09960	0.83	+0.1
1,903,137	+				-2.6
1,903,138	+				+1.9
1,903,138	-				+1.1
1,903,139	+				+0.7
1,903,139	+				-0.3
1,903,142	+				+0.1
1,903,143	-				-2.6
1,903,156	+				-0.9
1,903,224	+				+1.2
1,903,225	-				-0.7
1,903,255	-				+0.3
1,903,362	+				-0.9
1,903,362	+				-0.7
1,903,453	-				-1.2
1,903,574	-				+0.7
1,903,574	-				-0.8
1,903,578	-				+1.2
1,903,632	+				-0.1
1,903,682	+				+0.6
1,903,686	+				-0.4
1,903,688	+				-0.9
1,903,829	+				-0.2
1,903,830	-				+0.5
1,903,834	+				-0.9
1,903,834	+				+0.4
1,903,835	-				-0.5
1,903,835	-				-2.1
1,903,835	-				-1.5
1,903,835	-				+1.0
1,903,836	+				-0.5
1,903,837	-				+1.2
1,903,893	+				+0.3