Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS09315

Experiment: Experiment:TE2, Melon 1 Petiole 2 (TE2-S-M1-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Melon 1 Petiole 2 (TE2-S-M1-P2)
1,759,370	+		LU632_RS09305	0.78	-0.1
1,759,455	+		LU632_RS09305	0.88	+1.4
1,759,455	+		LU632_RS09305	0.88	-1.2
1,759,463	+		LU632_RS09305	0.89	+0.2
1,759,464	-		LU632_RS09305	0.89	-1.2
1,759,465	+		LU632_RS09305	0.89	-0.6
1,759,466	-		LU632_RS09305	0.89	-0.8
1,759,466	-		LU632_RS09305	0.89	-1.1
1,759,606	+				+0.8
1,759,607	-				-0.4
1,759,607	-				+1.0
1,759,669	+				-0.5
1,759,670	-				+0.4
1,759,670	-				+1.1
1,759,670	-				+0.7
1,759,718	+				-0.1
1,759,719	-				-1.7
1,759,722	+				-2.0
1,759,784	+				-1.0
1,759,789	+				-2.2
1,759,789	+				+1.5
1,759,790	-				-2.0
1,759,790	-				-1.0
1,759,806	+				+0.2
1,759,866	-				+1.1
1,759,866	-				+2.3
1,759,926	+				-0.9
1,760,098	+		LU632_RS09310	0.36	-1.0
1,760,129	-		LU632_RS09310	0.45	-0.5
1,760,129	-		LU632_RS09310	0.45	-0.9
1,760,144	+		LU632_RS09310	0.49	+1.1
1,760,144	+		LU632_RS09310	0.49	+1.8
1,760,145	-		LU632_RS09310	0.50	-1.9
1,760,145	-		LU632_RS09310	0.50	-0.5
1,760,235	-		LU632_RS09310	0.75	+0.3
1,760,250	+		LU632_RS09310	0.79	+0.1
1,760,250	+		LU632_RS09310	0.79	-0.5
1,760,251	-		LU632_RS09310	0.80	+0.1
1,761,618	+				+1.8
1,761,650	+				-1.6
1,761,726	-	dld	LU632_RS09320	0.11	+0.5
1,761,749	+	dld	LU632_RS09320	0.13	-1.7
1,761,750	-	dld	LU632_RS09320	0.13	+1.4
1,761,830	+	dld	LU632_RS09320	0.19	-1.5
1,761,850	+	dld	LU632_RS09320	0.20	-1.2
1,761,851	-	dld	LU632_RS09320	0.20	+1.1
1,761,874	+	dld	LU632_RS09320	0.22	-1.2
1,761,874	+	dld	LU632_RS09320	0.22	+0.3
1,761,875	-	dld	LU632_RS09320	0.22	+1.1
1,761,875	-	dld	LU632_RS09320	0.22	-2.2
1,761,975	+	dld	LU632_RS09320	0.29	-0.5
1,761,975	+	dld	LU632_RS09320	0.29	-2.1
1,762,117	+	dld	LU632_RS09320	0.39	+0.0
1,762,142	+	dld	LU632_RS09320	0.41	+1.7
1,762,143	-	dld	LU632_RS09320	0.41	-1.1
1,762,147	+	dld	LU632_RS09320	0.41	-0.7
1,762,148	-	dld	LU632_RS09320	0.41	+1.3
1,762,171	-	dld	LU632_RS09320	0.43	-1.0
1,762,298	+	dld	LU632_RS09320	0.52	-1.4