Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS08665

Experiment: Experiment:TE2, Melon 1 Petiole 2 (TE2-S-M1-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Melon 1 Petiole 2 (TE2-S-M1-P2)
1,622,316	-	yegS	LU632_RS08660	0.19	+0.1
1,622,556	-	yegS	LU632_RS08660	0.46	+0.2
1,622,556	-	yegS	LU632_RS08660	0.46	+0.1
1,622,645	+	yegS	LU632_RS08660	0.55	-0.4
1,622,650	+	yegS	LU632_RS08660	0.56	+1.1
1,622,841	-	yegS	LU632_RS08660	0.77	-0.0
1,622,905	+	yegS	LU632_RS08660	0.84	+1.7
1,622,905	+	yegS	LU632_RS08660	0.84	+1.1
1,623,093	-				-2.0
1,623,093	-				-0.4
1,623,093	-				-2.2
1,623,097	+				+1.1
1,623,098	-				-1.0
1,623,172	+				-0.9
1,623,417	+	yegQ	LU632_RS08665	0.12	+0.1
1,623,581	+	yegQ	LU632_RS08665	0.24	+0.8
1,623,590	+	yegQ	LU632_RS08665	0.24	-1.1
1,623,629	+	yegQ	LU632_RS08665	0.27	+0.1
1,623,741	-	yegQ	LU632_RS08665	0.35	-0.0
1,623,781	+	yegQ	LU632_RS08665	0.38	-0.1
1,623,781	+	yegQ	LU632_RS08665	0.38	+2.1
1,623,781	+	yegQ	LU632_RS08665	0.38	+0.6
1,623,782	-	yegQ	LU632_RS08665	0.38	+1.1
1,623,782	-	yegQ	LU632_RS08665	0.38	+0.2
1,623,845	+	yegQ	LU632_RS08665	0.43	-0.2
1,623,845	+	yegQ	LU632_RS08665	0.43	+0.5
1,623,845	+	yegQ	LU632_RS08665	0.43	-0.9
1,623,845	+	yegQ	LU632_RS08665	0.43	+2.3
1,623,845	+	yegQ	LU632_RS08665	0.43	+0.4
1,623,846	-	yegQ	LU632_RS08665	0.43	+0.1
1,623,876	+	yegQ	LU632_RS08665	0.45	+0.3
1,623,876	+	yegQ	LU632_RS08665	0.45	-1.7
1,623,876	+	yegQ	LU632_RS08665	0.45	-1.3
1,623,877	-	yegQ	LU632_RS08665	0.45	+1.1
1,623,877	-	yegQ	LU632_RS08665	0.45	-0.2
1,623,877	-	yegQ	LU632_RS08665	0.45	+1.1
1,623,877	-	yegQ	LU632_RS08665	0.45	-0.4
1,623,878	+	yegQ	LU632_RS08665	0.45	-0.8
1,623,878	+	yegQ	LU632_RS08665	0.45	+3.3
1,624,027	-	yegQ	LU632_RS08665	0.56	+0.6
1,624,027	-	yegQ	LU632_RS08665	0.56	+0.1
1,624,027	-	yegQ	LU632_RS08665	0.56	-0.3
1,624,083	+	yegQ	LU632_RS08665	0.60	+2.5
1,624,086	-	yegQ	LU632_RS08665	0.60	+0.4
1,624,326	+	yegQ	LU632_RS08665	0.78	-0.4
1,624,327	-	yegQ	LU632_RS08665	0.78	+0.3
1,624,327	-	yegQ	LU632_RS08665	0.78	+0.6
1,624,395	+	yegQ	LU632_RS08665	0.83	-0.4
1,624,428	+	yegQ	LU632_RS08665	0.85	-0.4
1,624,428	+	yegQ	LU632_RS08665	0.85	-0.5
1,624,529	+				-1.1
1,624,577	+				-0.4
1,624,629	+				-0.0
1,624,665	+				+1.1
1,624,665	+				+0.7
1,624,665	+				-1.7
1,624,666	-				+2.7
1,624,700	+				-0.4
1,624,701	-				+0.2
1,624,742	+				+0.1
1,624,742	+				-2.9
1,624,893	+	baeR	LU632_RS08670	0.15	+0.9
1,624,893	+	baeR	LU632_RS08670	0.15	+1.0
1,624,893	+	baeR	LU632_RS08670	0.15	+0.9
1,624,894	+	baeR	LU632_RS08670	0.16	-1.0
1,624,894	-	baeR	LU632_RS08670	0.16	-1.4
1,624,939	+	baeR	LU632_RS08670	0.22	+0.5
1,625,111	+	baeR	LU632_RS08670	0.46	+0.1
1,625,111	+	baeR	LU632_RS08670	0.46	+1.3
1,625,111	+	baeR	LU632_RS08670	0.46	+1.6
1,625,111	+	baeR	LU632_RS08670	0.46	-2.6
1,625,111	+	baeR	LU632_RS08670	0.46	-2.6
1,625,112	-	baeR	LU632_RS08670	0.47	-0.9
1,625,174	+	baeR	LU632_RS08670	0.55	+1.7
1,625,175	-	baeR	LU632_RS08670	0.56	+0.2
1,625,182	+	baeR	LU632_RS08670	0.57	-0.1
1,625,286	+	baeR	LU632_RS08670	0.71	-0.4
1,625,325	+	baeR	LU632_RS08670	0.77	-0.2
1,625,364	+	baeR	LU632_RS08670	0.82	+1.1
1,625,365	-	baeR	LU632_RS08670	0.83	+0.6
1,625,416	+				-0.2
1,625,417	-				+0.1
1,625,489	+				+1.1
1,625,489	+				-0.1
1,625,490	-				+1.6
1,625,526	-				+2.5
1,625,534	-				-1.2
1,625,542	+				+0.8
1,625,543	-				+1.0
1,625,543	-				-0.1
1,625,548	+				+1.1
1,625,548	+				+1.1
1,625,548	+				-0.1
1,625,549	-				+0.8
1,625,549	-				-0.2
1,625,553	+				+0.4
1,625,554	-				+0.8