Experiment: Experiment:TE2, Melon 1 Petiole 2 (TE2-S-M1-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS08375 and LU632_RS08380 overlap by 82 nucleotides LU632_RS08380 and LU632_RS08385 are separated by 113 nucleotides LU632_RS08385 and LU632_RS08390 overlap by 24 nucleotides LU632_RS08390 and LU632_RS08395 are separated by 112 nucleotides LU632_RS08395 and LU632_RS08400 are separated by 133 nucleotides
LU632_RS08375: LU632_RS08375 - IS1 family transposase, at 1,575,196 to 1,575,699
_RS08375
LU632_RS08380: LU632_RS08380 - IS1-like element transposase, at 1,575,618 to 1,575,893
_RS08380
LU632_RS08385: LU632_RS08385 - hypothetical protein, at 1,576,007 to 1,576,213
_RS08385
LU632_RS08390: LU632_RS08390 - hypothetical protein, at 1,576,190 to 1,576,402
_RS08390
LU632_RS08395: LU632_RS08395 - LacI family DNA-binding transcriptional regulator, at 1,576,515 to 1,576,640
_RS08395
LU632_RS08400: LU632_RS08400 - Rpn family recombination-promoting nuclease/putative transposase, at 1,576,774 to 1,577,526
_RS08400
Position (kb) 1576
1577 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1575.042 kb on + strand at 1575.042 kb on + strand at 1575.043 kb on - strand at 1575.043 kb on - strand at 1575.044 kb on + strand at 1575.044 kb on + strand at 1575.044 kb on + strand at 1575.095 kb on - strand at 1575.106 kb on + strand at 1575.107 kb on - strand at 1575.144 kb on - strand at 1575.146 kb on + strand at 1575.168 kb on - strand at 1575.973 kb on - strand at 1575.986 kb on - strand at 1576.016 kb on + strand at 1576.017 kb on - strand at 1576.018 kb on + strand at 1576.018 kb on + strand at 1576.033 kb on - strand, within LU632_RS08385 at 1576.127 kb on + strand, within LU632_RS08385 at 1576.128 kb on - strand, within LU632_RS08385 at 1576.340 kb on + strand, within LU632_RS08390 at 1576.353 kb on + strand, within LU632_RS08390 at 1576.353 kb on + strand, within LU632_RS08390 at 1576.353 kb on + strand, within LU632_RS08390 at 1576.353 kb on + strand, within LU632_RS08390 at 1576.353 kb on + strand, within LU632_RS08390 at 1576.354 kb on - strand, within LU632_RS08390 at 1576.354 kb on - strand, within LU632_RS08390 at 1576.354 kb on - strand, within LU632_RS08390 at 1576.366 kb on + strand, within LU632_RS08390 at 1576.435 kb on + strand at 1576.436 kb on - strand at 1576.477 kb on + strand at 1576.504 kb on + strand at 1576.622 kb on - strand, within LU632_RS08395 at 1576.652 kb on - strand at 1576.744 kb on + strand at 1576.744 kb on + strand at 1576.744 kb on + strand at 1576.744 kb on + strand at 1577.005 kb on - strand, within LU632_RS08400 at 1577.005 kb on - strand, within LU632_RS08400 at 1577.005 kb on - strand, within LU632_RS08400 at 1577.005 kb on - strand, within LU632_RS08400 at 1577.005 kb on - strand, within LU632_RS08400 at 1577.046 kb on + strand, within LU632_RS08400 at 1577.063 kb on + strand, within LU632_RS08400 at 1577.112 kb on - strand, within LU632_RS08400 at 1577.114 kb on + strand, within LU632_RS08400 at 1577.115 kb on - strand, within LU632_RS08400 at 1577.152 kb on - strand, within LU632_RS08400 at 1577.152 kb on - strand, within LU632_RS08400
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 1 Petiole 2 (TE2-S-M1-P2) remove 1,575,042 + +1.6 1,575,042 + +1.8 1,575,043 - +0.3 1,575,043 - +1.2 1,575,044 + +0.2 1,575,044 + +1.2 1,575,044 + -0.6 1,575,095 - +2.1 1,575,106 + -0.8 1,575,107 - +1.7 1,575,144 - +1.2 1,575,146 + -0.7 1,575,168 - +0.6 1,575,973 - +0.0 1,575,986 - -0.0 1,576,016 + +0.3 1,576,017 - -1.4 1,576,018 + +0.2 1,576,018 + -0.2 1,576,033 - LU632_RS08385 0.13 +0.5 1,576,127 + LU632_RS08385 0.58 -0.1 1,576,128 - LU632_RS08385 0.58 +0.4 1,576,340 + LU632_RS08390 0.70 +1.9 1,576,353 + LU632_RS08390 0.77 +0.5 1,576,353 + LU632_RS08390 0.77 +0.7 1,576,353 + LU632_RS08390 0.77 +0.1 1,576,353 + LU632_RS08390 0.77 -0.8 1,576,353 + LU632_RS08390 0.77 +1.2 1,576,354 - LU632_RS08390 0.77 +0.5 1,576,354 - LU632_RS08390 0.77 -1.0 1,576,354 - LU632_RS08390 0.77 -2.0 1,576,366 + LU632_RS08390 0.83 +0.1 1,576,435 + -0.5 1,576,436 - -2.8 1,576,477 + +1.2 1,576,504 + -1.1 1,576,622 - LU632_RS08395 0.85 -0.5 1,576,652 - -0.4 1,576,744 + -1.7 1,576,744 + +0.1 1,576,744 + +1.2 1,576,744 + +0.4 1,577,005 - LU632_RS08400 0.31 +0.5 1,577,005 - LU632_RS08400 0.31 +1.4 1,577,005 - LU632_RS08400 0.31 +1.8 1,577,005 - LU632_RS08400 0.31 -0.7 1,577,005 - LU632_RS08400 0.31 -0.6 1,577,046 + LU632_RS08400 0.36 -0.2 1,577,063 + LU632_RS08400 0.38 +1.2 1,577,112 - LU632_RS08400 0.45 -0.1 1,577,114 + LU632_RS08400 0.45 +0.2 1,577,115 - LU632_RS08400 0.45 -0.8 1,577,152 - LU632_RS08400 0.50 +0.9 1,577,152 - LU632_RS08400 0.50 +0.8
Or see this region's nucleotide sequence