Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS08015

Experiment: Experiment:TE2, Melon 1 Petiole 2 (TE2-S-M1-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Melon 1 Petiole 2 (TE2-S-M1-P2)
1,500,445	+	nuoI	LU632_RS08000	0.82	-1.2
1,500,446	-	nuoI	LU632_RS08000	0.82	-3.2
1,500,446	-	nuoI	LU632_RS08000	0.82	-2.6
1,500,537	+				+1.0
1,500,537	+				+0.6
1,500,643	+	nuoJ	LU632_RS08005	0.16	-1.4
1,500,643	+	nuoJ	LU632_RS08005	0.16	+0.1
1,500,643	+	nuoJ	LU632_RS08005	0.16	-0.2
1,500,643	+	nuoJ	LU632_RS08005	0.16	-1.2
1,500,643	+	nuoJ	LU632_RS08005	0.16	-1.9
1,500,643	+	nuoJ	LU632_RS08005	0.16	+0.1
1,500,644	-	nuoJ	LU632_RS08005	0.16	-4.4
1,500,644	-	nuoJ	LU632_RS08005	0.16	+1.1
1,500,644	-	nuoJ	LU632_RS08005	0.16	-2.0
1,500,645	+	nuoJ	LU632_RS08005	0.16	-3.8
1,500,645	+	nuoJ	LU632_RS08005	0.16	-1.4
1,500,645	+	nuoJ	LU632_RS08005	0.16	+0.1
1,500,646	-	nuoJ	LU632_RS08005	0.17	-0.9
1,500,879	+	nuoJ	LU632_RS08005	0.59	-2.7
1,500,880	-	nuoJ	LU632_RS08005	0.59	-2.2
1,500,964	-	nuoJ	LU632_RS08005	0.74	-1.7
1,501,020	+	nuoJ	LU632_RS08005	0.85	+0.1
1,501,021	-	nuoJ	LU632_RS08005	0.85	-1.7
1,501,190	-	nuoK	LU632_RS08010	0.30	+0.1
1,501,283	+	nuoK	LU632_RS08010	0.60	+1.1
1,501,283	+	nuoK	LU632_RS08010	0.60	-0.4
1,501,283	+	nuoK	LU632_RS08010	0.60	+1.7
1,501,283	+	nuoK	LU632_RS08010	0.60	-1.6
1,501,283	+	nuoK	LU632_RS08010	0.60	-1.4
1,501,283	+	nuoK	LU632_RS08010	0.60	+0.1
1,501,283	+	nuoK	LU632_RS08010	0.60	-1.4
1,501,283	+	nuoK	LU632_RS08010	0.60	-2.2
1,501,284	-	nuoK	LU632_RS08010	0.61	-1.2
1,501,284	-	nuoK	LU632_RS08010	0.61	-1.4
1,501,284	-	nuoK	LU632_RS08010	0.61	-3.4
1,501,533	+				-0.4
1,501,533	+				+1.1
1,501,533	+				-1.9
1,501,534	-				-3.1
1,501,537	+				+1.1
1,501,537	+				-2.2
1,501,538	-				-1.4
1,501,715	-	nuoL	LU632_RS08015	0.17	-3.2
1,501,715	-	nuoL	LU632_RS08015	0.17	-1.4
1,501,716	+	nuoL	LU632_RS08015	0.17	-0.9
1,501,716	+	nuoL	LU632_RS08015	0.17	+0.1
1,501,717	-	nuoL	LU632_RS08015	0.17	+0.1
1,501,756	-	nuoL	LU632_RS08015	0.19	-2.3
1,501,756	-	nuoL	LU632_RS08015	0.19	-1.6
1,501,816	+	nuoL	LU632_RS08015	0.23	-2.3
1,501,817	-	nuoL	LU632_RS08015	0.23	-0.4
1,501,850	-	nuoL	LU632_RS08015	0.25	-1.7
1,501,867	+	nuoL	LU632_RS08015	0.25	+1.1
1,501,867	+	nuoL	LU632_RS08015	0.25	-3.3
1,501,868	-	nuoL	LU632_RS08015	0.26	-2.4
1,501,868	-	nuoL	LU632_RS08015	0.26	-0.0
1,501,868	-	nuoL	LU632_RS08015	0.26	-0.2
1,501,870	+	nuoL	LU632_RS08015	0.26	-1.4
1,501,911	+	nuoL	LU632_RS08015	0.28	-1.3
1,502,037	+	nuoL	LU632_RS08015	0.35	-2.4
1,502,037	+	nuoL	LU632_RS08015	0.35	-1.4
1,502,037	+	nuoL	LU632_RS08015	0.35	-3.2
1,502,038	-	nuoL	LU632_RS08015	0.35	-2.2
1,502,251	-	nuoL	LU632_RS08015	0.46	-0.9
1,502,251	-	nuoL	LU632_RS08015	0.46	-2.0
1,502,326	+	nuoL	LU632_RS08015	0.50	+1.1
1,502,351	-	nuoL	LU632_RS08015	0.52	+0.1
1,502,352	+	nuoL	LU632_RS08015	0.52	-0.4
1,502,352	+	nuoL	LU632_RS08015	0.52	-2.2
1,502,352	+	nuoL	LU632_RS08015	0.52	+0.1
1,502,352	+	nuoL	LU632_RS08015	0.52	-3.0
1,502,352	+	nuoL	LU632_RS08015	0.52	+0.1
1,502,353	-	nuoL	LU632_RS08015	0.52	+1.1
1,502,353	-	nuoL	LU632_RS08015	0.52	+0.1
1,502,505	+	nuoL	LU632_RS08015	0.60	-3.6
1,502,506	-	nuoL	LU632_RS08015	0.60	-1.4
1,502,524	+	nuoL	LU632_RS08015	0.61	-2.8
1,502,525	-	nuoL	LU632_RS08015	0.61	-0.4
1,502,667	+	nuoL	LU632_RS08015	0.69	-2.6
1,502,668	-	nuoL	LU632_RS08015	0.69	-2.8
1,502,680	+	nuoL	LU632_RS08015	0.70	-0.9
1,502,680	+	nuoL	LU632_RS08015	0.70	-2.2
1,502,681	-	nuoL	LU632_RS08015	0.70	+0.1
1,502,682	+	nuoL	LU632_RS08015	0.70	-1.2
1,502,683	-	nuoL	LU632_RS08015	0.70	-3.6
1,502,752	-	nuoL	LU632_RS08015	0.74	-1.7
1,502,777	+	nuoL	LU632_RS08015	0.75	+0.1
1,502,778	-	nuoL	LU632_RS08015	0.75	-1.4
1,503,229	+				-1.9
1,503,294	+				+1.1
1,503,305	+				-0.9
1,503,305	+				-0.8
1,503,359	+				-2.4
1,503,365	-				-2.0
1,503,365	-				+1.1
1,503,365	-				+1.1
1,503,372	+				-1.7
1,503,373	-				+0.1
1,503,373	-				-3.5
1,503,476	-				+1.1
1,503,477	+				-1.3
1,503,657	-	nuoM	LU632_RS08020	0.13	-1.4
1,503,688	+	nuoM	LU632_RS08020	0.15	+1.1
1,503,909	-	nuoM	LU632_RS08020	0.30	-0.4
1,503,909	-	nuoM	LU632_RS08020	0.30	-1.4
1,503,909	-	nuoM	LU632_RS08020	0.30	-2.2
1,503,909	-	nuoM	LU632_RS08020	0.30	-1.7
1,503,986	+	nuoM	LU632_RS08020	0.35	-1.9
1,503,986	+	nuoM	LU632_RS08020	0.35	-2.4
1,503,987	-	nuoM	LU632_RS08020	0.35	-2.8
1,503,987	-	nuoM	LU632_RS08020	0.35	+0.1
1,503,987	-	nuoM	LU632_RS08020	0.35	-2.6
1,504,035	+	nuoM	LU632_RS08020	0.38	-1.2
1,504,077	-	nuoM	LU632_RS08020	0.41	-1.2
1,504,119	-	nuoM	LU632_RS08020	0.43	-1.2
1,504,119	-	nuoM	LU632_RS08020	0.43	-2.3