Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS07095

Experiment: Experiment:TE2, Melon 1 Petiole 2 (TE2-S-M1-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Melon 1 Petiole 2 (TE2-S-M1-P2)
1,343,318	+		LU632_RS07080	0.87	+0.9
1,343,353	-				+1.1
1,343,354	+				+1.2
1,343,355	-				+0.2
1,343,355	-				-0.2
1,343,382	+				-1.1
1,343,382	+				+0.5
1,343,407	+				+1.2
1,343,438	+		LU632_RS07085	0.15	-0.8
1,343,439	-		LU632_RS07085	0.15	+0.2
1,343,439	-		LU632_RS07085	0.15	+0.5
1,343,439	-		LU632_RS07085	0.15	-1.4
1,343,439	-		LU632_RS07085	0.15	+0.6
1,343,439	-		LU632_RS07085	0.15	+0.4
1,343,480	-		LU632_RS07085	0.25	+0.4
1,343,532	-		LU632_RS07085	0.37	-2.5
1,343,532	-		LU632_RS07085	0.37	-0.4
1,343,694	-		LU632_RS07085	0.75	+0.8
1,343,729	+		LU632_RS07085	0.83	-0.8
1,343,729	+		LU632_RS07085	0.83	-2.0
1,343,729	+		LU632_RS07085	0.83	-0.7
1,343,729	+		LU632_RS07085	0.83	-0.8
1,343,730	-		LU632_RS07085	0.83	+0.9
1,343,730	-		LU632_RS07085	0.83	+2.6
1,343,730	-		LU632_RS07085	0.83	-2.3
1,343,730	-		LU632_RS07085	0.83	+1.3
1,343,869	+				-0.4
1,343,873	+				+1.5
1,343,873	+				-0.5
1,343,874	-				+5.4
1,343,874	-				+0.1
1,343,974	+				+1.0
1,344,146	-		LU632_RS07090	0.77	-2.2
1,344,206	-				-2.0
1,344,230	-				+1.3
1,344,271	-				+1.0
1,344,271	-				+1.0
1,344,272	+				-1.1
1,344,273	-				-2.5
1,344,440	-		LU632_RS07095	0.17	-1.5
1,344,440	-		LU632_RS07095	0.17	-1.1
1,344,449	+		LU632_RS07095	0.18	+0.8
1,344,449	+		LU632_RS07095	0.18	-1.4
1,344,449	+		LU632_RS07095	0.18	+0.5
1,344,449	+		LU632_RS07095	0.18	+1.5
1,344,449	+		LU632_RS07095	0.18	+0.7
1,344,450	-		LU632_RS07095	0.19	+2.8
1,344,450	-		LU632_RS07095	0.19	+0.6
1,344,451	+		LU632_RS07095	0.19	+1.2
1,344,451	+		LU632_RS07095	0.19	+0.6
1,344,451	+		LU632_RS07095	0.19	+1.4
1,344,451	+		LU632_RS07095	0.19	-0.1
1,344,452	-		LU632_RS07095	0.19	+0.7
1,344,452	-		LU632_RS07095	0.19	+0.2
1,344,532	+		LU632_RS07095	0.30	+0.2
1,344,532	+		LU632_RS07095	0.30	-0.7
1,344,533	-		LU632_RS07095	0.30	+0.2
1,344,533	-		LU632_RS07095	0.30	+0.4
1,344,562	+		LU632_RS07095	0.34	-0.4
1,344,562	+		LU632_RS07095	0.34	+1.0
1,344,562	+		LU632_RS07095	0.34	-0.5
1,344,563	-		LU632_RS07095	0.34	-2.5
1,344,627	+		LU632_RS07095	0.43	-0.0
1,344,627	+		LU632_RS07095	0.43	-0.4
1,344,628	-		LU632_RS07095	0.43	-0.8
1,344,629	-		LU632_RS07095	0.43	+1.2
1,344,720	+		LU632_RS07095	0.56	+0.6
1,344,774	+		LU632_RS07095	0.64	+0.2
1,344,778	+		LU632_RS07095	0.64	-1.6
1,344,778	+		LU632_RS07095	0.64	-1.3
1,344,778	+		LU632_RS07095	0.64	-0.7
1,344,778	+		LU632_RS07095	0.64	-0.2
1,344,792	+		LU632_RS07095	0.66	+0.5
1,344,792	+		LU632_RS07095	0.66	+0.3
1,344,793	-		LU632_RS07095	0.66	-0.8
1,344,793	-		LU632_RS07095	0.66	+1.2
1,344,835	-		LU632_RS07095	0.72	-2.3
1,344,905	+		LU632_RS07095	0.82	+0.7
1,344,905	+		LU632_RS07095	0.82	-0.9
1,344,905	+		LU632_RS07095	0.82	-0.4
1,344,906	-		LU632_RS07095	0.82	-0.6
1,344,906	-		LU632_RS07095	0.82	-0.8
1,344,960	+		LU632_RS07095	0.89	-0.2
1,344,993	+				-1.5
1,345,033	+				+0.2
1,345,034	-				-1.4
1,345,053	+				-0.8
1,345,053	+				-2.4
1,345,053	+				+0.6
1,345,053	+				+0.5
1,345,054	-				-1.1
1,345,054	-				+0.9
1,345,054	-				+2.2
1,345,169	-		LU632_RS07100	0.29	+1.0
1,345,169	-		LU632_RS07100	0.29	-0.8
1,345,258	+		LU632_RS07100	0.50	-1.4
1,345,258	+		LU632_RS07100	0.50	-1.4
1,345,259	-		LU632_RS07100	0.50	-0.6
1,345,259	-		LU632_RS07100	0.50	-0.6
1,345,259	-		LU632_RS07100	0.50	-1.1
1,345,259	-		LU632_RS07100	0.50	-0.4
1,345,282	-		LU632_RS07100	0.55	-0.3
1,345,358	-		LU632_RS07100	0.73	-0.4
1,345,358	-		LU632_RS07100	0.73	-0.1
1,345,359	+		LU632_RS07100	0.73	+0.8
1,345,359	+		LU632_RS07100	0.73	+1.6
1,345,359	+		LU632_RS07100	0.73	-0.6
1,345,360	-		LU632_RS07100	0.73	-1.1
1,345,360	-		LU632_RS07100	0.73	+0.2
1,345,418	+		LU632_RS07100	0.87	-0.5
1,345,418	+		LU632_RS07100	0.87	+1.5
1,345,418	+		LU632_RS07100	0.87	+1.2
1,345,421	+		LU632_RS07100	0.88	+0.8
1,345,472	-				-2.6
1,345,479	-		LU632_RS07105	0.17	+0.6
1,345,499	+		LU632_RS07105	0.23	+0.2
1,345,499	+		LU632_RS07105	0.23	+1.2
1,345,500	-		LU632_RS07105	0.23	-0.4
1,345,563	-		LU632_RS07105	0.43	-0.6
1,345,613	+		LU632_RS07105	0.59	+0.8
1,345,691	+		LU632_RS07105	0.83	+0.9
1,345,692	-		LU632_RS07105	0.83	+1.6
1,345,695	-		LU632_RS07105	0.84	+1.2
1,345,695	-		LU632_RS07105	0.84	+1.2
1,345,743	+				+0.6
1,345,874	-		LU632_RS07110	0.26	-2.0
1,345,874	-		LU632_RS07110	0.26	-2.0
1,346,006	+		LU632_RS07110	0.53	-0.4
1,346,007	-		LU632_RS07110	0.53	+0.2
1,346,025	+		LU632_RS07110	0.57	+0.3
1,346,025	+		LU632_RS07110	0.57	+0.9
1,346,026	-		LU632_RS07110	0.57	-3.1
1,346,026	-		LU632_RS07110	0.57	-0.1
1,346,026	-		LU632_RS07110	0.57	+1.5