Experiment: Experiment:TE2, Melon 1 Petiole 2 (TE2-S-M1-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt alaC and glk are separated by 830 nucleotides glk and LU632_RS04650 are separated by 712 nucleotides
LU632_RS04640: alaC - alanine transaminase, at 906,456 to 907,691
alaC
LU632_RS04645: glk - glucokinase, at 908,522 to 909,487
glk
LU632_RS04650: LU632_RS04650 - hypothetical protein, at 910,200 to 910,670
_RS04650
Position (kb) 908
909
910 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 907.580 kb on - strand at 907.580 kb on - strand at 907.609 kb on + strand at 907.610 kb on - strand at 907.628 kb on - strand at 907.628 kb on - strand at 907.631 kb on + strand at 907.631 kb on + strand at 907.706 kb on + strand at 907.706 kb on + strand at 907.707 kb on - strand at 907.809 kb on + strand at 907.967 kb on + strand at 907.997 kb on + strand at 907.998 kb on - strand at 907.998 kb on - strand at 908.018 kb on + strand at 908.018 kb on + strand at 908.103 kb on - strand at 908.347 kb on + strand at 908.411 kb on + strand at 908.485 kb on + strand at 908.486 kb on - strand at 908.520 kb on + strand at 908.520 kb on + strand at 908.521 kb on - strand at 908.523 kb on + strand at 908.523 kb on + strand at 908.524 kb on - strand at 908.620 kb on - strand, within glk at 908.620 kb on - strand, within glk at 908.666 kb on + strand, within glk at 908.834 kb on + strand, within glk at 908.863 kb on + strand, within glk at 908.864 kb on - strand, within glk at 908.864 kb on - strand, within glk at 908.880 kb on - strand, within glk at 908.893 kb on - strand, within glk at 908.961 kb on - strand, within glk at 908.961 kb on - strand, within glk at 908.961 kb on - strand, within glk at 909.006 kb on - strand, within glk at 909.106 kb on + strand, within glk at 909.319 kb on + strand, within glk at 909.319 kb on + strand, within glk at 909.320 kb on - strand, within glk at 909.320 kb on - strand, within glk at 909.323 kb on - strand, within glk at 909.345 kb on + strand, within glk at 909.477 kb on + strand at 909.478 kb on - strand at 909.488 kb on + strand at 909.489 kb on - strand at 909.490 kb on + strand at 909.592 kb on + strand at 909.626 kb on - strand at 909.629 kb on + strand at 909.629 kb on + strand at 909.629 kb on + strand at 909.629 kb on + strand at 909.629 kb on + strand at 909.629 kb on + strand at 909.629 kb on + strand at 909.629 kb on + strand at 909.629 kb on + strand at 909.629 kb on + strand at 909.629 kb on + strand at 909.632 kb on - strand at 909.633 kb on + strand at 909.633 kb on + strand at 909.644 kb on - strand at 909.785 kb on + strand at 909.860 kb on + strand at 909.926 kb on + strand at 909.927 kb on - strand at 909.950 kb on + strand at 909.969 kb on + strand at 909.969 kb on + strand at 909.973 kb on + strand at 909.974 kb on - strand at 909.993 kb on + strand at 909.993 kb on + strand at 910.073 kb on - strand at 910.093 kb on + strand at 910.093 kb on + strand at 910.094 kb on - strand at 910.171 kb on + strand at 910.172 kb on - strand at 910.272 kb on - strand, within LU632_RS04650 at 910.423 kb on + strand, within LU632_RS04650 at 910.473 kb on - strand, within LU632_RS04650 at 910.482 kb on - strand, within LU632_RS04650
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 1 Petiole 2 (TE2-S-M1-P2) remove 907,580 - -2.7 907,580 - +0.7 907,609 + +0.2 907,610 - +0.1 907,628 - +0.2 907,628 - -0.3 907,631 + -0.8 907,631 + +0.7 907,706 + -0.3 907,706 + -1.7 907,707 - +1.1 907,809 + -0.2 907,967 + -0.1 907,997 + -0.3 907,998 - -1.0 907,998 - +2.5 908,018 + -1.1 908,018 + -1.5 908,103 - +1.0 908,347 + +0.3 908,411 + -1.6 908,485 + -3.1 908,486 - -1.8 908,520 + -1.2 908,520 + +0.4 908,521 - +0.0 908,523 + -0.8 908,523 + +1.1 908,524 - -0.0 908,620 - glk LU632_RS04645 0.10 +1.2 908,620 - glk LU632_RS04645 0.10 +1.2 908,666 + glk LU632_RS04645 0.15 -1.2 908,834 + glk LU632_RS04645 0.32 +1.6 908,863 + glk LU632_RS04645 0.35 +4.8 908,864 - glk LU632_RS04645 0.35 -1.6 908,864 - glk LU632_RS04645 0.35 -1.1 908,880 - glk LU632_RS04645 0.37 +1.2 908,893 - glk LU632_RS04645 0.38 -0.5 908,961 - glk LU632_RS04645 0.45 -0.4 908,961 - glk LU632_RS04645 0.45 +3.7 908,961 - glk LU632_RS04645 0.45 -1.8 909,006 - glk LU632_RS04645 0.50 +0.7 909,106 + glk LU632_RS04645 0.60 -1.8 909,319 + glk LU632_RS04645 0.83 -0.3 909,319 + glk LU632_RS04645 0.83 -1.1 909,320 - glk LU632_RS04645 0.83 -3.2 909,320 - glk LU632_RS04645 0.83 -2.1 909,323 - glk LU632_RS04645 0.83 -1.1 909,345 + glk LU632_RS04645 0.85 -0.9 909,477 + -2.3 909,478 - +0.5 909,488 + +0.5 909,489 - -1.8 909,490 + +0.5 909,592 + -0.3 909,626 - -0.7 909,629 + -0.1 909,629 + -0.2 909,629 + +0.7 909,629 + +0.7 909,629 + +0.8 909,629 + +0.4 909,629 + -0.3 909,629 + -1.0 909,629 + +0.5 909,629 + +0.7 909,629 + -0.4 909,632 - -3.0 909,633 + -3.1 909,633 + +0.7 909,644 - -1.5 909,785 + -1.6 909,860 + -0.3 909,926 + +3.2 909,927 - +0.1 909,950 + +1.8 909,969 + -0.5 909,969 + -1.1 909,973 + +0.2 909,974 - +1.7 909,993 + +3.2 909,993 + +0.2 910,073 - +0.8 910,093 + -1.9 910,093 + -0.3 910,094 - +0.0 910,171 + -0.4 910,172 - +0.6 910,272 - LU632_RS04650 0.15 -1.1 910,423 + LU632_RS04650 0.47 +0.1 910,473 - LU632_RS04650 0.58 +0.5 910,482 - LU632_RS04650 0.60 -1.4
Or see this region's nucleotide sequence