Experiment: Experiment:TE2, Melon 1 Petiole 2 (TE2-S-M1-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS02540 and serB are separated by 123 nucleotides serB and radA are separated by 14 nucleotides
LU632_RS02540: LU632_RS02540 - YtjB family periplasmic protein, at 504,494 to 505,156
_RS02540
LU632_RS02545: serB - phosphoserine phosphatase, at 505,280 to 506,257
serB
LU632_RS02550: radA - DNA repair protein RadA, at 506,272 to 507,654
radA
Position (kb) 505
506
507 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 504.305 kb on - strand at 504.625 kb on + strand, within LU632_RS02540 at 504.625 kb on + strand, within LU632_RS02540 at 504.659 kb on + strand, within LU632_RS02540 at 504.659 kb on + strand, within LU632_RS02540 at 504.659 kb on + strand, within LU632_RS02540 at 504.789 kb on + strand, within LU632_RS02540 at 504.913 kb on + strand, within LU632_RS02540 at 505.082 kb on + strand, within LU632_RS02540 at 505.083 kb on - strand, within LU632_RS02540 at 505.175 kb on - strand at 505.175 kb on - strand at 505.205 kb on + strand at 505.205 kb on + strand at 505.206 kb on - strand at 505.278 kb on + strand at 505.279 kb on - strand at 505.286 kb on - strand at 505.289 kb on - strand at 505.319 kb on - strand at 505.319 kb on - strand at 505.660 kb on + strand, within serB at 505.660 kb on + strand, within serB at 505.660 kb on + strand, within serB at 505.660 kb on + strand, within serB at 505.661 kb on - strand, within serB at 505.661 kb on - strand, within serB at 505.903 kb on + strand, within serB at 505.907 kb on + strand, within serB at 505.919 kb on + strand, within serB at 506.009 kb on - strand, within serB at 506.026 kb on + strand, within serB at 506.026 kb on + strand, within serB at 506.027 kb on - strand, within serB at 506.269 kb on - strand at 506.299 kb on + strand at 506.300 kb on + strand at 506.301 kb on - strand at 506.301 kb on - strand at 506.304 kb on + strand at 506.599 kb on - strand, within radA at 506.609 kb on + strand, within radA at 506.650 kb on + strand, within radA at 506.650 kb on + strand, within radA at 506.651 kb on - strand, within radA at 506.727 kb on + strand, within radA at 506.728 kb on - strand, within radA at 506.784 kb on + strand, within radA at 506.878 kb on + strand, within radA at 506.879 kb on - strand, within radA at 506.934 kb on - strand, within radA at 506.934 kb on - strand, within radA at 506.934 kb on - strand, within radA at 506.979 kb on + strand, within radA at 506.979 kb on + strand, within radA at 506.979 kb on + strand, within radA at 507.037 kb on - strand, within radA at 507.037 kb on - strand, within radA at 507.043 kb on - strand, within radA
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 1 Petiole 2 (TE2-S-M1-P2) remove 504,305 - -0.3 504,625 + LU632_RS02540 0.20 +3.5 504,625 + LU632_RS02540 0.20 -2.6 504,659 + LU632_RS02540 0.25 +1.4 504,659 + LU632_RS02540 0.25 +0.4 504,659 + LU632_RS02540 0.25 -1.4 504,789 + LU632_RS02540 0.44 -2.2 504,913 + LU632_RS02540 0.63 +1.4 505,082 + LU632_RS02540 0.89 +0.9 505,083 - LU632_RS02540 0.89 -0.8 505,175 - +0.5 505,175 - +2.0 505,205 + +0.4 505,205 + -0.8 505,206 - -1.2 505,278 + -0.2 505,279 - -2.6 505,286 - +1.4 505,289 - -3.2 505,319 - +1.4 505,319 - -0.2 505,660 + serB LU632_RS02545 0.39 +0.4 505,660 + serB LU632_RS02545 0.39 +0.4 505,660 + serB LU632_RS02545 0.39 +1.4 505,660 + serB LU632_RS02545 0.39 +1.4 505,661 - serB LU632_RS02545 0.39 -1.4 505,661 - serB LU632_RS02545 0.39 -1.4 505,903 + serB LU632_RS02545 0.64 -0.6 505,907 + serB LU632_RS02545 0.64 +0.4 505,919 + serB LU632_RS02545 0.65 +0.4 506,009 - serB LU632_RS02545 0.75 +1.4 506,026 + serB LU632_RS02545 0.76 -0.4 506,026 + serB LU632_RS02545 0.76 -2.6 506,027 - serB LU632_RS02545 0.76 -0.6 506,269 - -0.9 506,299 + -0.8 506,300 + -0.8 506,301 - +0.4 506,301 - -0.0 506,304 + +0.2 506,599 - radA LU632_RS02550 0.24 -1.4 506,609 + radA LU632_RS02550 0.24 -0.9 506,650 + radA LU632_RS02550 0.27 -0.0 506,650 + radA LU632_RS02550 0.27 -0.3 506,651 - radA LU632_RS02550 0.27 -0.8 506,727 + radA LU632_RS02550 0.33 -1.9 506,728 - radA LU632_RS02550 0.33 -2.6 506,784 + radA LU632_RS02550 0.37 +1.4 506,878 + radA LU632_RS02550 0.44 -0.9 506,879 - radA LU632_RS02550 0.44 -1.9 506,934 - radA LU632_RS02550 0.48 -2.5 506,934 - radA LU632_RS02550 0.48 +0.4 506,934 - radA LU632_RS02550 0.48 -0.9 506,979 + radA LU632_RS02550 0.51 +1.2 506,979 + radA LU632_RS02550 0.51 +0.6 506,979 + radA LU632_RS02550 0.51 +1.2 507,037 - radA LU632_RS02550 0.55 -2.0 507,037 - radA LU632_RS02550 0.55 +0.5 507,043 - radA LU632_RS02550 0.56 -1.8
Or see this region's nucleotide sequence