Experiment: Experiment:TE2, Melon 1 Petiole 2 (TE2-S-M1-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS02240 and LU632_RS02245 are separated by 132 nucleotides LU632_RS02245 and LU632_RS02250 are separated by 459 nucleotides
LU632_RS02240: LU632_RS02240 - hypothetical protein, at 443,061 to 443,366
_RS02240
LU632_RS02245: LU632_RS02245 - hypothetical protein, at 443,499 to 443,918
_RS02245
LU632_RS02250: LU632_RS02250 - aldose 1-epimerase family protein, at 444,378 to 445,586
_RS02250
Position (kb) 443
444 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 442.553 kb on + strand at 442.676 kb on - strand at 442.676 kb on - strand at 442.758 kb on + strand at 442.785 kb on + strand at 442.785 kb on + strand at 442.785 kb on + strand at 442.785 kb on + strand at 442.786 kb on - strand at 442.786 kb on - strand at 442.786 kb on - strand at 442.786 kb on - strand at 442.786 kb on - strand at 442.856 kb on + strand at 442.856 kb on + strand at 442.961 kb on + strand at 442.961 kb on + strand at 442.961 kb on + strand at 442.962 kb on - strand at 443.003 kb on - strand at 443.077 kb on - strand at 443.111 kb on + strand, within LU632_RS02240 at 443.111 kb on + strand, within LU632_RS02240 at 443.111 kb on + strand, within LU632_RS02240 at 443.112 kb on - strand, within LU632_RS02240 at 443.113 kb on + strand, within LU632_RS02240 at 443.114 kb on - strand, within LU632_RS02240 at 443.114 kb on - strand, within LU632_RS02240 at 443.167 kb on - strand, within LU632_RS02240 at 443.229 kb on + strand, within LU632_RS02240 at 443.230 kb on - strand, within LU632_RS02240 at 443.232 kb on - strand, within LU632_RS02240 at 443.240 kb on + strand, within LU632_RS02240 at 443.291 kb on - strand, within LU632_RS02240 at 443.293 kb on - strand, within LU632_RS02240 at 443.321 kb on - strand, within LU632_RS02240 at 443.341 kb on - strand at 443.478 kb on - strand at 443.510 kb on + strand at 443.516 kb on + strand at 443.517 kb on - strand at 443.520 kb on - strand at 443.523 kb on + strand at 443.524 kb on - strand at 443.560 kb on + strand, within LU632_RS02245 at 443.567 kb on + strand, within LU632_RS02245 at 443.569 kb on + strand, within LU632_RS02245 at 443.570 kb on - strand, within LU632_RS02245 at 443.570 kb on - strand, within LU632_RS02245 at 443.587 kb on + strand, within LU632_RS02245 at 443.587 kb on + strand, within LU632_RS02245 at 443.619 kb on - strand, within LU632_RS02245 at 443.633 kb on + strand, within LU632_RS02245 at 443.635 kb on + strand, within LU632_RS02245 at 443.636 kb on - strand, within LU632_RS02245 at 443.636 kb on - strand, within LU632_RS02245 at 443.636 kb on - strand, within LU632_RS02245 at 443.759 kb on + strand, within LU632_RS02245 at 443.759 kb on + strand, within LU632_RS02245 at 443.760 kb on - strand, within LU632_RS02245 at 443.760 kb on - strand, within LU632_RS02245 at 443.760 kb on - strand, within LU632_RS02245 at 443.760 kb on - strand, within LU632_RS02245 at 443.760 kb on - strand, within LU632_RS02245 at 443.762 kb on - strand, within LU632_RS02245 at 443.795 kb on + strand, within LU632_RS02245 at 443.865 kb on - strand, within LU632_RS02245 at 443.869 kb on + strand, within LU632_RS02245 at 443.870 kb on - strand, within LU632_RS02245 at 443.927 kb on + strand at 443.927 kb on + strand at 443.927 kb on + strand at 443.928 kb on - strand at 443.928 kb on - strand at 443.928 kb on - strand at 443.959 kb on + strand at 444.022 kb on + strand at 444.022 kb on + strand at 444.022 kb on + strand at 444.023 kb on - strand at 444.397 kb on + strand at 444.398 kb on - strand at 444.401 kb on + strand at 444.416 kb on + strand at 444.416 kb on + strand at 444.417 kb on - strand at 444.418 kb on + strand at 444.493 kb on + strand at 444.597 kb on - strand, within LU632_RS02250 at 444.824 kb on + strand, within LU632_RS02250 at 444.825 kb on - strand, within LU632_RS02250 at 444.828 kb on + strand, within LU632_RS02250 at 444.829 kb on - strand, within LU632_RS02250 at 444.829 kb on - strand, within LU632_RS02250 at 444.830 kb on + strand, within LU632_RS02250 at 444.830 kb on + strand, within LU632_RS02250 at 444.831 kb on - strand, within LU632_RS02250 at 444.831 kb on - strand, within LU632_RS02250 at 444.847 kb on + strand, within LU632_RS02250 at 444.848 kb on - strand, within LU632_RS02250
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 1 Petiole 2 (TE2-S-M1-P2) remove 442,553 + +0.2 442,676 - -0.9 442,676 - -1.7 442,758 + -0.0 442,785 + +1.2 442,785 + -1.2 442,785 + +1.2 442,785 + -0.1 442,786 - -2.4 442,786 - -3.5 442,786 - -1.4 442,786 - +1.0 442,786 - +0.4 442,856 + -0.8 442,856 + -0.1 442,961 + -0.2 442,961 + +0.9 442,961 + +0.5 442,962 - -0.4 443,003 - -0.2 443,077 - +0.4 443,111 + LU632_RS02240 0.16 -2.2 443,111 + LU632_RS02240 0.16 -0.5 443,111 + LU632_RS02240 0.16 -0.4 443,112 - LU632_RS02240 0.17 +2.8 443,113 + LU632_RS02240 0.17 +0.3 443,114 - LU632_RS02240 0.17 -1.5 443,114 - LU632_RS02240 0.17 -1.5 443,167 - LU632_RS02240 0.35 -0.5 443,229 + LU632_RS02240 0.55 +0.5 443,230 - LU632_RS02240 0.55 +0.2 443,232 - LU632_RS02240 0.56 -0.1 443,240 + LU632_RS02240 0.58 -1.0 443,291 - LU632_RS02240 0.75 +1.5 443,293 - LU632_RS02240 0.76 -0.9 443,321 - LU632_RS02240 0.85 +0.7 443,341 - -0.5 443,478 - +0.5 443,510 + -0.1 443,516 + -0.6 443,517 - -0.9 443,520 - +0.9 443,523 + -0.7 443,524 - -0.7 443,560 + LU632_RS02245 0.15 +3.6 443,567 + LU632_RS02245 0.16 +1.9 443,569 + LU632_RS02245 0.17 +0.2 443,570 - LU632_RS02245 0.17 +3.8 443,570 - LU632_RS02245 0.17 -2.9 443,587 + LU632_RS02245 0.21 -0.9 443,587 + LU632_RS02245 0.21 +0.3 443,619 - LU632_RS02245 0.29 +1.8 443,633 + LU632_RS02245 0.32 +0.4 443,635 + LU632_RS02245 0.32 -0.3 443,636 - LU632_RS02245 0.33 -0.1 443,636 - LU632_RS02245 0.33 -0.4 443,636 - LU632_RS02245 0.33 -0.1 443,759 + LU632_RS02245 0.62 -2.4 443,759 + LU632_RS02245 0.62 -0.1 443,760 - LU632_RS02245 0.62 -0.4 443,760 - LU632_RS02245 0.62 -0.1 443,760 - LU632_RS02245 0.62 +0.7 443,760 - LU632_RS02245 0.62 +1.5 443,760 - LU632_RS02245 0.62 +0.7 443,762 - LU632_RS02245 0.63 +1.5 443,795 + LU632_RS02245 0.70 +1.2 443,865 - LU632_RS02245 0.87 +0.5 443,869 + LU632_RS02245 0.88 +0.9 443,870 - LU632_RS02245 0.88 -2.1 443,927 + -0.1 443,927 + +1.7 443,927 + -0.4 443,928 - -0.8 443,928 - -1.5 443,928 - +1.0 443,959 + +1.2 444,022 + -0.1 444,022 + +0.6 444,022 + +3.3 444,023 - +0.3 444,397 + -0.7 444,398 - -0.3 444,401 + -1.5 444,416 + -1.8 444,416 + +0.3 444,417 - +2.2 444,418 + +3.0 444,493 + +1.5 444,597 - LU632_RS02250 0.18 +1.5 444,824 + LU632_RS02250 0.37 +0.8 444,825 - LU632_RS02250 0.37 -3.0 444,828 + LU632_RS02250 0.37 +2.0 444,829 - LU632_RS02250 0.37 -1.8 444,829 - LU632_RS02250 0.37 -0.1 444,830 + LU632_RS02250 0.37 -0.7 444,830 + LU632_RS02250 0.37 -0.4 444,831 - LU632_RS02250 0.37 -1.3 444,831 - LU632_RS02250 0.37 -0.1 444,847 + LU632_RS02250 0.39 +0.3 444,848 - LU632_RS02250 0.39 +0.4
Or see this region's nucleotide sequence