Experiment: Arabinoxylan (Rye Flour) 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS13565 and HMPREF1181_RS13570 are separated by 184 nucleotides HMPREF1181_RS13570 and HMPREF1181_RS17980 are separated by 11 nucleotides
HMPREF1181_RS13565: HMPREF1181_RS13565 - restriction endonuclease, at 224,182 to 225,114
_RS13565
HMPREF1181_RS13570: HMPREF1181_RS13570 - helix-turn-helix domain-containing protein, at 225,299 to 225,664
_RS13570
HMPREF1181_RS17980: HMPREF1181_RS17980 - DUF3987 domain-containing protein, at 225,676 to 227,052
_RS17980
Position (kb) 225
226 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 224.355 kb on + strand, within HMPREF1181_RS13565 at 224.356 kb on - strand, within HMPREF1181_RS13565 at 224.361 kb on - strand, within HMPREF1181_RS13565 at 224.373 kb on + strand, within HMPREF1181_RS13565 at 224.448 kb on + strand, within HMPREF1181_RS13565 at 224.449 kb on - strand, within HMPREF1181_RS13565 at 224.451 kb on + strand, within HMPREF1181_RS13565 at 224.455 kb on + strand, within HMPREF1181_RS13565 at 224.456 kb on - strand, within HMPREF1181_RS13565 at 224.456 kb on - strand, within HMPREF1181_RS13565 at 224.463 kb on - strand, within HMPREF1181_RS13565 at 224.477 kb on - strand, within HMPREF1181_RS13565 at 224.482 kb on + strand, within HMPREF1181_RS13565 at 224.483 kb on - strand, within HMPREF1181_RS13565 at 224.485 kb on - strand, within HMPREF1181_RS13565 at 224.490 kb on + strand, within HMPREF1181_RS13565 at 224.503 kb on - strand, within HMPREF1181_RS13565 at 224.517 kb on + strand, within HMPREF1181_RS13565 at 224.518 kb on - strand, within HMPREF1181_RS13565 at 224.524 kb on + strand, within HMPREF1181_RS13565 at 224.524 kb on + strand, within HMPREF1181_RS13565 at 224.524 kb on + strand, within HMPREF1181_RS13565 at 224.524 kb on + strand, within HMPREF1181_RS13565 at 224.525 kb on - strand, within HMPREF1181_RS13565 at 224.525 kb on - strand, within HMPREF1181_RS13565 at 224.600 kb on - strand, within HMPREF1181_RS13565 at 224.690 kb on + strand, within HMPREF1181_RS13565 at 224.690 kb on + strand, within HMPREF1181_RS13565 at 224.757 kb on + strand, within HMPREF1181_RS13565 at 224.757 kb on + strand, within HMPREF1181_RS13565 at 224.758 kb on - strand, within HMPREF1181_RS13565 at 224.854 kb on - strand, within HMPREF1181_RS13565 at 224.877 kb on + strand, within HMPREF1181_RS13565 at 224.879 kb on + strand, within HMPREF1181_RS13565 at 224.929 kb on + strand, within HMPREF1181_RS13565 at 224.951 kb on - strand, within HMPREF1181_RS13565 at 224.992 kb on - strand, within HMPREF1181_RS13565 at 225.051 kb on + strand at 225.092 kb on - strand at 225.154 kb on - strand at 225.176 kb on - strand at 225.176 kb on - strand at 225.201 kb on - strand at 225.228 kb on - strand at 225.284 kb on - strand at 225.433 kb on - strand, within HMPREF1181_RS13570 at 225.477 kb on - strand, within HMPREF1181_RS13570 at 225.477 kb on - strand, within HMPREF1181_RS13570 at 225.479 kb on - strand, within HMPREF1181_RS13570 at 225.479 kb on - strand, within HMPREF1181_RS13570 at 225.617 kb on - strand, within HMPREF1181_RS13570 at 225.617 kb on - strand, within HMPREF1181_RS13570 at 225.694 kb on - strand at 225.729 kb on - strand at 225.729 kb on - strand at 225.821 kb on - strand, within HMPREF1181_RS17980 at 225.873 kb on - strand, within HMPREF1181_RS17980 at 225.873 kb on - strand, within HMPREF1181_RS17980 at 225.929 kb on - strand, within HMPREF1181_RS17980 at 225.929 kb on - strand, within HMPREF1181_RS17980 at 225.931 kb on - strand, within HMPREF1181_RS17980 at 226.197 kb on - strand, within HMPREF1181_RS17980 at 226.247 kb on - strand, within HMPREF1181_RS17980 at 226.352 kb on - strand, within HMPREF1181_RS17980 at 226.354 kb on - strand, within HMPREF1181_RS17980 at 226.354 kb on - strand, within HMPREF1181_RS17980 at 226.354 kb on - strand, within HMPREF1181_RS17980
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/mL (C) remove 224,355 + HMPREF1181_RS13565 0.19 -5.2 224,356 - HMPREF1181_RS13565 0.19 -0.4 224,361 - HMPREF1181_RS13565 0.19 -1.7 224,373 + HMPREF1181_RS13565 0.20 +1.2 224,448 + HMPREF1181_RS13565 0.29 -2.9 224,449 - HMPREF1181_RS13565 0.29 -0.2 224,451 + HMPREF1181_RS13565 0.29 -0.9 224,455 + HMPREF1181_RS13565 0.29 +0.2 224,456 - HMPREF1181_RS13565 0.29 +1.8 224,456 - HMPREF1181_RS13565 0.29 -1.0 224,463 - HMPREF1181_RS13565 0.30 +0.4 224,477 - HMPREF1181_RS13565 0.32 -2.4 224,482 + HMPREF1181_RS13565 0.32 +1.5 224,483 - HMPREF1181_RS13565 0.32 -1.9 224,485 - HMPREF1181_RS13565 0.32 +1.1 224,490 + HMPREF1181_RS13565 0.33 +1.0 224,503 - HMPREF1181_RS13565 0.34 -1.3 224,517 + HMPREF1181_RS13565 0.36 -4.5 224,518 - HMPREF1181_RS13565 0.36 +0.9 224,524 + HMPREF1181_RS13565 0.37 -1.4 224,524 + HMPREF1181_RS13565 0.37 +3.6 224,524 + HMPREF1181_RS13565 0.37 +1.3 224,524 + HMPREF1181_RS13565 0.37 -0.7 224,525 - HMPREF1181_RS13565 0.37 +0.0 224,525 - HMPREF1181_RS13565 0.37 -4.0 224,600 - HMPREF1181_RS13565 0.45 -1.3 224,690 + HMPREF1181_RS13565 0.54 +0.4 224,690 + HMPREF1181_RS13565 0.54 +0.3 224,757 + HMPREF1181_RS13565 0.62 -2.3 224,757 + HMPREF1181_RS13565 0.62 -4.6 224,758 - HMPREF1181_RS13565 0.62 -1.8 224,854 - HMPREF1181_RS13565 0.72 +1.4 224,877 + HMPREF1181_RS13565 0.74 +1.7 224,879 + HMPREF1181_RS13565 0.75 -0.8 224,929 + HMPREF1181_RS13565 0.80 -4.0 224,951 - HMPREF1181_RS13565 0.82 +0.9 224,992 - HMPREF1181_RS13565 0.87 +1.3 225,051 + -0.4 225,092 - +1.0 225,154 - -0.7 225,176 - +1.7 225,176 - -0.2 225,201 - +3.2 225,228 - +1.2 225,284 - +3.2 225,433 - HMPREF1181_RS13570 0.37 -0.6 225,477 - HMPREF1181_RS13570 0.49 +2.6 225,477 - HMPREF1181_RS13570 0.49 -1.9 225,479 - HMPREF1181_RS13570 0.49 -3.1 225,479 - HMPREF1181_RS13570 0.49 -0.5 225,617 - HMPREF1181_RS13570 0.87 -2.0 225,617 - HMPREF1181_RS13570 0.87 +0.3 225,694 - +1.2 225,729 - +1.6 225,729 - -2.6 225,821 - HMPREF1181_RS17980 0.11 -1.9 225,873 - HMPREF1181_RS17980 0.14 -0.8 225,873 - HMPREF1181_RS17980 0.14 +3.6 225,929 - HMPREF1181_RS17980 0.18 +0.6 225,929 - HMPREF1181_RS17980 0.18 -4.0 225,931 - HMPREF1181_RS17980 0.19 +2.8 226,197 - HMPREF1181_RS17980 0.38 +1.7 226,247 - HMPREF1181_RS17980 0.41 -4.0 226,352 - HMPREF1181_RS17980 0.49 +0.5 226,354 - HMPREF1181_RS17980 0.49 +0.2 226,354 - HMPREF1181_RS17980 0.49 +0.1 226,354 - HMPREF1181_RS17980 0.49 +0.6
Or see this region's nucleotide sequence