Strain Fitness in Bacteroides stercoris CC31F around HMPREF1181_RS12990

Experiment: Arabinoxylan (Rye Flour) 2.5 mg/mL (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHMPREF1181_RS12985 and HMPREF1181_RS12990 are separated by 27 nucleotidesHMPREF1181_RS12990 and HMPREF1181_RS12995 are separated by 13 nucleotides HMPREF1181_RS12985: HMPREF1181_RS12985 - alpha-glucan family phosphorylase, at 92,013 to 94,571 _RS12985 HMPREF1181_RS12990: HMPREF1181_RS12990 - cation:proton antiporter, at 94,599 to 96,845 _RS12990 HMPREF1181_RS12995: HMPREF1181_RS12995 - 6-phosphofructokinase, at 96,859 to 97,842 _RS12995 Position (kb) 94 95 96 97Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 93.599 kb on - strand, within HMPREF1181_RS12985at 93.627 kb on + strand, within HMPREF1181_RS12985at 93.690 kb on + strand, within HMPREF1181_RS12985at 93.691 kb on - strand, within HMPREF1181_RS12985at 93.695 kb on - strand, within HMPREF1181_RS12985at 93.749 kb on - strand, within HMPREF1181_RS12985at 93.750 kb on + strand, within HMPREF1181_RS12985at 93.750 kb on + strand, within HMPREF1181_RS12985at 93.820 kb on - strand, within HMPREF1181_RS12985at 93.907 kb on + strand, within HMPREF1181_RS12985at 93.952 kb on - strand, within HMPREF1181_RS12985at 93.984 kb on + strand, within HMPREF1181_RS12985at 94.011 kb on + strand, within HMPREF1181_RS12985at 94.195 kb on + strand, within HMPREF1181_RS12985at 94.198 kb on - strand, within HMPREF1181_RS12985at 94.202 kb on + strand, within HMPREF1181_RS12985at 94.237 kb on + strand, within HMPREF1181_RS12985at 94.315 kb on + strand, within HMPREF1181_RS12985at 94.469 kb on + strandat 94.518 kb on + strandat 94.523 kb on + strandat 94.523 kb on + strandat 94.523 kb on + strandat 94.524 kb on - strandat 94.554 kb on - strandat 94.620 kb on + strandat 94.623 kb on + strandat 94.694 kb on + strandat 94.694 kb on + strandat 94.737 kb on + strandat 94.900 kb on - strand, within HMPREF1181_RS12990at 94.918 kb on + strand, within HMPREF1181_RS12990at 94.919 kb on - strand, within HMPREF1181_RS12990at 94.919 kb on - strand, within HMPREF1181_RS12990at 94.919 kb on - strand, within HMPREF1181_RS12990at 94.919 kb on - strand, within HMPREF1181_RS12990at 94.947 kb on + strand, within HMPREF1181_RS12990at 94.989 kb on + strand, within HMPREF1181_RS12990at 95.039 kb on - strand, within HMPREF1181_RS12990at 95.076 kb on + strand, within HMPREF1181_RS12990at 95.129 kb on + strand, within HMPREF1181_RS12990at 95.169 kb on - strand, within HMPREF1181_RS12990at 95.182 kb on - strand, within HMPREF1181_RS12990at 95.235 kb on - strand, within HMPREF1181_RS12990at 95.291 kb on + strand, within HMPREF1181_RS12990at 95.331 kb on + strand, within HMPREF1181_RS12990at 95.331 kb on + strand, within HMPREF1181_RS12990at 95.334 kb on + strand, within HMPREF1181_RS12990at 95.424 kb on + strand, within HMPREF1181_RS12990at 95.524 kb on + strand, within HMPREF1181_RS12990at 95.579 kb on + strand, within HMPREF1181_RS12990at 95.594 kb on + strand, within HMPREF1181_RS12990at 95.637 kb on - strand, within HMPREF1181_RS12990at 95.637 kb on - strand, within HMPREF1181_RS12990at 95.643 kb on + strand, within HMPREF1181_RS12990at 95.683 kb on - strand, within HMPREF1181_RS12990at 95.683 kb on - strand, within HMPREF1181_RS12990at 95.717 kb on + strand, within HMPREF1181_RS12990at 95.717 kb on + strand, within HMPREF1181_RS12990at 95.717 kb on + strand, within HMPREF1181_RS12990at 95.718 kb on - strand, within HMPREF1181_RS12990at 95.748 kb on + strand, within HMPREF1181_RS12990at 95.774 kb on - strand, within HMPREF1181_RS12990at 95.963 kb on - strand, within HMPREF1181_RS12990at 96.013 kb on - strand, within HMPREF1181_RS12990at 96.042 kb on + strand, within HMPREF1181_RS12990at 96.047 kb on + strand, within HMPREF1181_RS12990at 96.047 kb on + strand, within HMPREF1181_RS12990at 96.207 kb on + strand, within HMPREF1181_RS12990at 96.225 kb on - strand, within HMPREF1181_RS12990at 96.235 kb on + strand, within HMPREF1181_RS12990at 96.235 kb on + strand, within HMPREF1181_RS12990at 96.239 kb on + strand, within HMPREF1181_RS12990at 96.527 kb on + strand, within HMPREF1181_RS12990at 96.527 kb on + strand, within HMPREF1181_RS12990at 96.528 kb on - strand, within HMPREF1181_RS12990at 96.535 kb on - strand, within HMPREF1181_RS12990at 96.553 kb on - strand, within HMPREF1181_RS12990at 96.740 kb on - strandat 96.845 kb on + strandat 96.846 kb on - strandat 96.848 kb on + strandat 96.941 kb on + strandat 96.967 kb on + strand, within HMPREF1181_RS12995at 96.967 kb on + strand, within HMPREF1181_RS12995at 97.035 kb on + strand, within HMPREF1181_RS12995at 97.084 kb on - strand, within HMPREF1181_RS12995at 97.138 kb on + strand, within HMPREF1181_RS12995at 97.139 kb on - strand, within HMPREF1181_RS12995at 97.139 kb on - strand, within HMPREF1181_RS12995at 97.139 kb on - strand, within HMPREF1181_RS12995at 97.180 kb on + strand, within HMPREF1181_RS12995at 97.180 kb on + strand, within HMPREF1181_RS12995at 97.288 kb on + strand, within HMPREF1181_RS12995at 97.348 kb on - strand, within HMPREF1181_RS12995at 97.428 kb on + strand, within HMPREF1181_RS12995at 97.445 kb on - strand, within HMPREF1181_RS12995at 97.475 kb on - strand, within HMPREF1181_RS12995at 97.490 kb on + strand, within HMPREF1181_RS12995at 97.491 kb on - strand, within HMPREF1181_RS12995at 97.491 kb on - strand, within HMPREF1181_RS12995at 97.570 kb on + strand, within HMPREF1181_RS12995at 97.578 kb on + strand, within HMPREF1181_RS12995at 97.579 kb on - strand, within HMPREF1181_RS12995at 97.579 kb on - strand, within HMPREF1181_RS12995at 97.663 kb on - strand, within HMPREF1181_RS12995at 97.663 kb on - strand, within HMPREF1181_RS12995at 97.827 kb on + strandat 97.828 kb on - strandat 97.830 kb on - strandat 97.836 kb on + strandat 97.842 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/mL (C)
remove
93,599 - HMPREF1181_RS12985 0.62 -0.7
93,627 + HMPREF1181_RS12985 0.63 -1.3
93,690 + HMPREF1181_RS12985 0.66 -1.5
93,691 - HMPREF1181_RS12985 0.66 -0.0
93,695 - HMPREF1181_RS12985 0.66 +0.5
93,749 - HMPREF1181_RS12985 0.68 -2.9
93,750 + HMPREF1181_RS12985 0.68 +0.3
93,750 + HMPREF1181_RS12985 0.68 +0.5
93,820 - HMPREF1181_RS12985 0.71 -0.3
93,907 + HMPREF1181_RS12985 0.74 +1.5
93,952 - HMPREF1181_RS12985 0.76 -3.9
93,984 + HMPREF1181_RS12985 0.77 -3.1
94,011 + HMPREF1181_RS12985 0.78 +1.7
94,195 + HMPREF1181_RS12985 0.85 +0.5
94,198 - HMPREF1181_RS12985 0.85 -0.0
94,202 + HMPREF1181_RS12985 0.86 -3.1
94,237 + HMPREF1181_RS12985 0.87 -0.7
94,315 + HMPREF1181_RS12985 0.90 -3.9
94,469 + -0.2
94,518 + -3.2
94,523 + +1.7
94,523 + -0.6
94,523 + -0.0
94,524 - +1.2
94,554 - +1.5
94,620 + -3.6
94,623 + -2.1
94,694 + -4.2
94,694 + +2.6
94,737 + -2.6
94,900 - HMPREF1181_RS12990 0.13 -0.2
94,918 + HMPREF1181_RS12990 0.14 -2.0
94,919 - HMPREF1181_RS12990 0.14 +0.2
94,919 - HMPREF1181_RS12990 0.14 +0.7
94,919 - HMPREF1181_RS12990 0.14 -0.8
94,919 - HMPREF1181_RS12990 0.14 -0.5
94,947 + HMPREF1181_RS12990 0.15 -1.2
94,989 + HMPREF1181_RS12990 0.17 +2.2
95,039 - HMPREF1181_RS12990 0.20 -0.2
95,076 + HMPREF1181_RS12990 0.21 +2.1
95,129 + HMPREF1181_RS12990 0.24 -0.4
95,169 - HMPREF1181_RS12990 0.25 -4.0
95,182 - HMPREF1181_RS12990 0.26 -1.2
95,235 - HMPREF1181_RS12990 0.28 -0.9
95,291 + HMPREF1181_RS12990 0.31 -0.0
95,331 + HMPREF1181_RS12990 0.33 +1.2
95,331 + HMPREF1181_RS12990 0.33 -1.2
95,334 + HMPREF1181_RS12990 0.33 -0.7
95,424 + HMPREF1181_RS12990 0.37 +0.9
95,524 + HMPREF1181_RS12990 0.41 -0.2
95,579 + HMPREF1181_RS12990 0.44 -1.0
95,594 + HMPREF1181_RS12990 0.44 -0.6
95,637 - HMPREF1181_RS12990 0.46 +0.1
95,637 - HMPREF1181_RS12990 0.46 +2.6
95,643 + HMPREF1181_RS12990 0.46 -1.1
95,683 - HMPREF1181_RS12990 0.48 -0.0
95,683 - HMPREF1181_RS12990 0.48 +0.9
95,717 + HMPREF1181_RS12990 0.50 -2.3
95,717 + HMPREF1181_RS12990 0.50 +2.4
95,717 + HMPREF1181_RS12990 0.50 -0.8
95,718 - HMPREF1181_RS12990 0.50 -0.3
95,748 + HMPREF1181_RS12990 0.51 +2.3
95,774 - HMPREF1181_RS12990 0.52 -1.0
95,963 - HMPREF1181_RS12990 0.61 -0.4
96,013 - HMPREF1181_RS12990 0.63 -0.0
96,042 + HMPREF1181_RS12990 0.64 +0.8
96,047 + HMPREF1181_RS12990 0.64 -2.3
96,047 + HMPREF1181_RS12990 0.64 +0.7
96,207 + HMPREF1181_RS12990 0.72 -2.7
96,225 - HMPREF1181_RS12990 0.72 +0.9
96,235 + HMPREF1181_RS12990 0.73 +2.3
96,235 + HMPREF1181_RS12990 0.73 -0.6
96,239 + HMPREF1181_RS12990 0.73 +1.1
96,527 + HMPREF1181_RS12990 0.86 -0.5
96,527 + HMPREF1181_RS12990 0.86 -1.1
96,528 - HMPREF1181_RS12990 0.86 +2.3
96,535 - HMPREF1181_RS12990 0.86 -0.4
96,553 - HMPREF1181_RS12990 0.87 -2.9
96,740 - +0.5
96,845 + -0.2
96,846 - -1.0
96,848 + -0.6
96,941 + -0.5
96,967 + HMPREF1181_RS12995 0.11 -1.3
96,967 + HMPREF1181_RS12995 0.11 +1.2
97,035 + HMPREF1181_RS12995 0.18 +0.4
97,084 - HMPREF1181_RS12995 0.23 -0.2
97,138 + HMPREF1181_RS12995 0.28 -2.2
97,139 - HMPREF1181_RS12995 0.28 -0.6
97,139 - HMPREF1181_RS12995 0.28 +0.3
97,139 - HMPREF1181_RS12995 0.28 -1.2
97,180 + HMPREF1181_RS12995 0.33 -4.3
97,180 + HMPREF1181_RS12995 0.33 +0.6
97,288 + HMPREF1181_RS12995 0.44 -4.1
97,348 - HMPREF1181_RS12995 0.50 -1.7
97,428 + HMPREF1181_RS12995 0.58 -0.9
97,445 - HMPREF1181_RS12995 0.60 +0.5
97,475 - HMPREF1181_RS12995 0.63 -1.5
97,490 + HMPREF1181_RS12995 0.64 -2.5
97,491 - HMPREF1181_RS12995 0.64 +1.5
97,491 - HMPREF1181_RS12995 0.64 -2.1
97,570 + HMPREF1181_RS12995 0.72 -1.9
97,578 + HMPREF1181_RS12995 0.73 -1.6
97,579 - HMPREF1181_RS12995 0.73 -0.1
97,579 - HMPREF1181_RS12995 0.73 -1.4
97,663 - HMPREF1181_RS12995 0.82 -1.2
97,663 - HMPREF1181_RS12995 0.82 -0.5
97,827 + +0.2
97,828 - -3.9
97,830 - -0.9
97,836 + -3.6
97,842 + -0.9

Or see this region's nucleotide sequence