Experiment: Arabinoxylan (Rye Flour) 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS12375 and HMPREF1181_RS12380 are separated by 2 nucleotides HMPREF1181_RS12380 and HMPREF1181_RS12385 are separated by 31 nucleotides
HMPREF1181_RS12375: HMPREF1181_RS12375 - efflux RND transporter permease subunit, at 472,674 to 475,709
_RS12375
HMPREF1181_RS12380: HMPREF1181_RS12380 - TolC family protein, at 475,712 to 476,995
_RS12380
HMPREF1181_RS12385: HMPREF1181_RS12385 - histidine kinase, at 477,027 to 478,052
_RS12385
Position (kb) 475
476
477 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 475.061 kb on + strand, within HMPREF1181_RS12375 at 475.065 kb on + strand, within HMPREF1181_RS12375 at 475.065 kb on + strand, within HMPREF1181_RS12375 at 475.065 kb on + strand, within HMPREF1181_RS12375 at 475.065 kb on + strand, within HMPREF1181_RS12375 at 475.066 kb on - strand, within HMPREF1181_RS12375 at 475.129 kb on + strand, within HMPREF1181_RS12375 at 475.142 kb on - strand, within HMPREF1181_RS12375 at 475.327 kb on + strand, within HMPREF1181_RS12375 at 475.327 kb on + strand, within HMPREF1181_RS12375 at 475.328 kb on - strand, within HMPREF1181_RS12375 at 475.345 kb on + strand, within HMPREF1181_RS12375 at 475.346 kb on - strand, within HMPREF1181_RS12375 at 475.443 kb on - strand at 475.620 kb on - strand at 475.675 kb on - strand at 475.677 kb on - strand at 475.704 kb on - strand at 475.707 kb on + strand at 475.707 kb on + strand at 475.726 kb on + strand at 475.726 kb on + strand at 475.795 kb on + strand at 475.814 kb on + strand at 475.925 kb on + strand, within HMPREF1181_RS12380 at 476.036 kb on + strand, within HMPREF1181_RS12380 at 476.037 kb on - strand, within HMPREF1181_RS12380 at 476.127 kb on + strand, within HMPREF1181_RS12380 at 476.133 kb on - strand, within HMPREF1181_RS12380 at 476.143 kb on + strand, within HMPREF1181_RS12380 at 476.150 kb on + strand, within HMPREF1181_RS12380 at 476.151 kb on - strand, within HMPREF1181_RS12380 at 476.310 kb on - strand, within HMPREF1181_RS12380 at 476.316 kb on + strand, within HMPREF1181_RS12380 at 476.317 kb on - strand, within HMPREF1181_RS12380 at 476.329 kb on + strand, within HMPREF1181_RS12380 at 476.329 kb on + strand, within HMPREF1181_RS12380 at 476.330 kb on - strand, within HMPREF1181_RS12380 at 476.494 kb on - strand, within HMPREF1181_RS12380 at 476.549 kb on + strand, within HMPREF1181_RS12380 at 476.550 kb on - strand, within HMPREF1181_RS12380 at 476.570 kb on + strand, within HMPREF1181_RS12380 at 476.571 kb on - strand, within HMPREF1181_RS12380 at 476.615 kb on + strand, within HMPREF1181_RS12380 at 476.616 kb on - strand, within HMPREF1181_RS12380 at 476.616 kb on - strand, within HMPREF1181_RS12380 at 476.624 kb on + strand, within HMPREF1181_RS12380 at 476.739 kb on + strand, within HMPREF1181_RS12380 at 476.931 kb on + strand at 476.932 kb on - strand at 476.932 kb on - strand at 476.974 kb on - strand at 476.991 kb on - strand at 477.013 kb on + strand at 477.103 kb on - strand at 477.103 kb on - strand at 477.228 kb on + strand, within HMPREF1181_RS12385 at 477.428 kb on - strand, within HMPREF1181_RS12385 at 477.481 kb on + strand, within HMPREF1181_RS12385 at 477.569 kb on + strand, within HMPREF1181_RS12385 at 477.572 kb on - strand, within HMPREF1181_RS12385 at 477.587 kb on + strand, within HMPREF1181_RS12385 at 477.705 kb on + strand, within HMPREF1181_RS12385 at 477.888 kb on + strand, within HMPREF1181_RS12385 at 477.889 kb on - strand, within HMPREF1181_RS12385 at 477.910 kb on + strand, within HMPREF1181_RS12385
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/mL (C) remove 475,061 + HMPREF1181_RS12375 0.79 +0.8 475,065 + HMPREF1181_RS12375 0.79 +2.3 475,065 + HMPREF1181_RS12375 0.79 +0.2 475,065 + HMPREF1181_RS12375 0.79 -1.4 475,065 + HMPREF1181_RS12375 0.79 +2.3 475,066 - HMPREF1181_RS12375 0.79 -0.4 475,129 + HMPREF1181_RS12375 0.81 -1.5 475,142 - HMPREF1181_RS12375 0.81 +1.4 475,327 + HMPREF1181_RS12375 0.87 -0.6 475,327 + HMPREF1181_RS12375 0.87 -3.7 475,328 - HMPREF1181_RS12375 0.87 +1.0 475,345 + HMPREF1181_RS12375 0.88 -2.7 475,346 - HMPREF1181_RS12375 0.88 -0.3 475,443 - -0.1 475,620 - +2.0 475,675 - -2.0 475,677 - +1.2 475,704 - -4.4 475,707 + -0.7 475,707 + +0.3 475,726 + +0.8 475,726 + +0.3 475,795 + -0.9 475,814 + -1.3 475,925 + HMPREF1181_RS12380 0.17 -2.3 476,036 + HMPREF1181_RS12380 0.25 +1.1 476,037 - HMPREF1181_RS12380 0.25 +2.6 476,127 + HMPREF1181_RS12380 0.32 -2.1 476,133 - HMPREF1181_RS12380 0.33 +0.7 476,143 + HMPREF1181_RS12380 0.34 -1.0 476,150 + HMPREF1181_RS12380 0.34 +2.5 476,151 - HMPREF1181_RS12380 0.34 -1.5 476,310 - HMPREF1181_RS12380 0.47 +1.3 476,316 + HMPREF1181_RS12380 0.47 -1.3 476,317 - HMPREF1181_RS12380 0.47 -1.1 476,329 + HMPREF1181_RS12380 0.48 +1.3 476,329 + HMPREF1181_RS12380 0.48 -0.3 476,330 - HMPREF1181_RS12380 0.48 +1.6 476,494 - HMPREF1181_RS12380 0.61 -1.0 476,549 + HMPREF1181_RS12380 0.65 +2.6 476,550 - HMPREF1181_RS12380 0.65 +2.0 476,570 + HMPREF1181_RS12380 0.67 -0.5 476,571 - HMPREF1181_RS12380 0.67 +0.9 476,615 + HMPREF1181_RS12380 0.70 +0.3 476,616 - HMPREF1181_RS12380 0.70 -1.7 476,616 - HMPREF1181_RS12380 0.70 +1.7 476,624 + HMPREF1181_RS12380 0.71 -0.3 476,739 + HMPREF1181_RS12380 0.80 +1.0 476,931 + -0.3 476,932 - -3.9 476,932 - +1.3 476,974 - -1.6 476,991 - +0.0 477,013 + -0.0 477,103 - -2.1 477,103 - +2.4 477,228 + HMPREF1181_RS12385 0.20 -0.3 477,428 - HMPREF1181_RS12385 0.39 -0.7 477,481 + HMPREF1181_RS12385 0.44 +1.1 477,569 + HMPREF1181_RS12385 0.53 +1.0 477,572 - HMPREF1181_RS12385 0.53 +0.0 477,587 + HMPREF1181_RS12385 0.55 +0.9 477,705 + HMPREF1181_RS12385 0.66 -4.3 477,888 + HMPREF1181_RS12385 0.84 +0.8 477,889 - HMPREF1181_RS12385 0.84 +0.1 477,910 + HMPREF1181_RS12385 0.86 -0.4
Or see this region's nucleotide sequence