Experiment: Arabinoxylan (Rye Flour) 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS09025 and HMPREF1181_RS09030 are separated by 5 nucleotides HMPREF1181_RS09030 and HMPREF1181_RS09035 are separated by 173 nucleotides HMPREF1181_RS09035 and HMPREF1181_RS09040 are separated by 70 nucleotides
HMPREF1181_RS09025: HMPREF1181_RS09025 - NADH-quinone oxidoreductase subunit J, at 406,287 to 406,799
_RS09025
HMPREF1181_RS09030: HMPREF1181_RS09030 - NADH-quinone oxidoreductase subunit NuoK, at 406,805 to 407,113
_RS09030
HMPREF1181_RS09035: HMPREF1181_RS09035 - NADH-quinone oxidoreductase subunit L, at 407,287 to 409,200
_RS09035
HMPREF1181_RS09040: HMPREF1181_RS09040 - NADH-quinone oxidoreductase subunit M, at 409,271 to 410,758
_RS09040
Position (kb) 407
408
409
410 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 406.313 kb on - strand at 406.318 kb on - strand at 406.379 kb on - strand, within HMPREF1181_RS09025 at 406.393 kb on - strand, within HMPREF1181_RS09025 at 406.393 kb on - strand, within HMPREF1181_RS09025 at 406.393 kb on - strand, within HMPREF1181_RS09025 at 406.446 kb on - strand, within HMPREF1181_RS09025 at 406.446 kb on - strand, within HMPREF1181_RS09025 at 406.446 kb on - strand, within HMPREF1181_RS09025 at 406.446 kb on - strand, within HMPREF1181_RS09025 at 406.470 kb on - strand, within HMPREF1181_RS09025 at 406.477 kb on - strand, within HMPREF1181_RS09025 at 406.500 kb on + strand, within HMPREF1181_RS09025 at 406.632 kb on - strand, within HMPREF1181_RS09025 at 406.632 kb on - strand, within HMPREF1181_RS09025 at 406.714 kb on - strand, within HMPREF1181_RS09025 at 406.724 kb on - strand, within HMPREF1181_RS09025 at 406.784 kb on - strand at 406.804 kb on + strand at 406.821 kb on - strand at 406.917 kb on + strand, within HMPREF1181_RS09030 at 407.054 kb on - strand, within HMPREF1181_RS09030 at 407.160 kb on - strand at 407.286 kb on + strand at 407.293 kb on + strand at 407.294 kb on - strand at 407.294 kb on - strand at 407.303 kb on + strand at 407.435 kb on + strand at 407.435 kb on + strand at 407.440 kb on + strand at 407.441 kb on - strand at 407.582 kb on + strand, within HMPREF1181_RS09035 at 407.625 kb on + strand, within HMPREF1181_RS09035 at 407.654 kb on - strand, within HMPREF1181_RS09035 at 407.726 kb on - strand, within HMPREF1181_RS09035 at 407.726 kb on - strand, within HMPREF1181_RS09035 at 407.726 kb on - strand, within HMPREF1181_RS09035 at 407.768 kb on + strand, within HMPREF1181_RS09035 at 407.776 kb on + strand, within HMPREF1181_RS09035 at 407.869 kb on + strand, within HMPREF1181_RS09035 at 407.890 kb on + strand, within HMPREF1181_RS09035 at 407.890 kb on + strand, within HMPREF1181_RS09035 at 407.890 kb on + strand, within HMPREF1181_RS09035 at 408.088 kb on + strand, within HMPREF1181_RS09035 at 408.125 kb on - strand, within HMPREF1181_RS09035 at 408.154 kb on + strand, within HMPREF1181_RS09035 at 408.179 kb on - strand, within HMPREF1181_RS09035 at 408.256 kb on - strand, within HMPREF1181_RS09035 at 408.313 kb on + strand, within HMPREF1181_RS09035 at 408.316 kb on - strand, within HMPREF1181_RS09035 at 408.439 kb on + strand, within HMPREF1181_RS09035 at 408.530 kb on + strand, within HMPREF1181_RS09035 at 408.607 kb on - strand, within HMPREF1181_RS09035 at 408.619 kb on + strand, within HMPREF1181_RS09035 at 408.750 kb on + strand, within HMPREF1181_RS09035 at 408.756 kb on - strand, within HMPREF1181_RS09035 at 408.808 kb on + strand, within HMPREF1181_RS09035 at 408.811 kb on - strand, within HMPREF1181_RS09035 at 408.890 kb on - strand, within HMPREF1181_RS09035 at 408.892 kb on - strand, within HMPREF1181_RS09035 at 408.959 kb on - strand, within HMPREF1181_RS09035 at 409.144 kb on + strand at 409.144 kb on + strand at 409.181 kb on + strand at 409.181 kb on + strand at 409.227 kb on + strand at 409.227 kb on + strand at 409.227 kb on + strand at 409.238 kb on + strand at 409.239 kb on - strand at 409.254 kb on - strand at 409.254 kb on - strand at 409.254 kb on - strand at 409.261 kb on + strand at 409.264 kb on + strand at 409.287 kb on + strand at 409.350 kb on + strand at 409.350 kb on + strand at 409.351 kb on - strand at 409.470 kb on + strand, within HMPREF1181_RS09040 at 409.655 kb on - strand, within HMPREF1181_RS09040 at 409.688 kb on + strand, within HMPREF1181_RS09040 at 409.823 kb on + strand, within HMPREF1181_RS09040 at 409.823 kb on + strand, within HMPREF1181_RS09040 at 409.824 kb on - strand, within HMPREF1181_RS09040 at 409.880 kb on - strand, within HMPREF1181_RS09040 at 410.175 kb on - strand, within HMPREF1181_RS09040 at 410.187 kb on - strand, within HMPREF1181_RS09040
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/mL (C) remove 406,313 - -1.4 406,318 - -0.9 406,379 - HMPREF1181_RS09025 0.18 -1.6 406,393 - HMPREF1181_RS09025 0.21 -0.7 406,393 - HMPREF1181_RS09025 0.21 -2.0 406,393 - HMPREF1181_RS09025 0.21 -0.3 406,446 - HMPREF1181_RS09025 0.31 -2.4 406,446 - HMPREF1181_RS09025 0.31 -0.9 406,446 - HMPREF1181_RS09025 0.31 -0.7 406,446 - HMPREF1181_RS09025 0.31 -4.3 406,470 - HMPREF1181_RS09025 0.36 -1.1 406,477 - HMPREF1181_RS09025 0.37 +2.7 406,500 + HMPREF1181_RS09025 0.42 +1.0 406,632 - HMPREF1181_RS09025 0.67 +1.8 406,632 - HMPREF1181_RS09025 0.67 +0.5 406,714 - HMPREF1181_RS09025 0.83 -1.6 406,724 - HMPREF1181_RS09025 0.85 -2.1 406,784 - -1.1 406,804 + +0.6 406,821 - +0.9 406,917 + HMPREF1181_RS09030 0.36 +3.0 407,054 - HMPREF1181_RS09030 0.81 +1.8 407,160 - +1.6 407,286 + -1.1 407,293 + +0.2 407,294 - +0.2 407,294 - -1.4 407,303 + -0.4 407,435 + -0.4 407,435 + -2.9 407,440 + -0.7 407,441 - +0.8 407,582 + HMPREF1181_RS09035 0.15 +0.3 407,625 + HMPREF1181_RS09035 0.18 +3.1 407,654 - HMPREF1181_RS09035 0.19 +0.2 407,726 - HMPREF1181_RS09035 0.23 -1.2 407,726 - HMPREF1181_RS09035 0.23 -2.1 407,726 - HMPREF1181_RS09035 0.23 +0.3 407,768 + HMPREF1181_RS09035 0.25 +0.6 407,776 + HMPREF1181_RS09035 0.26 +0.2 407,869 + HMPREF1181_RS09035 0.30 -0.8 407,890 + HMPREF1181_RS09035 0.32 +0.3 407,890 + HMPREF1181_RS09035 0.32 +2.6 407,890 + HMPREF1181_RS09035 0.32 -2.7 408,088 + HMPREF1181_RS09035 0.42 +0.6 408,125 - HMPREF1181_RS09035 0.44 -0.6 408,154 + HMPREF1181_RS09035 0.45 -0.9 408,179 - HMPREF1181_RS09035 0.47 +0.4 408,256 - HMPREF1181_RS09035 0.51 -2.7 408,313 + HMPREF1181_RS09035 0.54 -0.7 408,316 - HMPREF1181_RS09035 0.54 +0.8 408,439 + HMPREF1181_RS09035 0.60 +0.2 408,530 + HMPREF1181_RS09035 0.65 -1.2 408,607 - HMPREF1181_RS09035 0.69 +0.0 408,619 + HMPREF1181_RS09035 0.70 -1.3 408,750 + HMPREF1181_RS09035 0.76 +0.2 408,756 - HMPREF1181_RS09035 0.77 -3.4 408,808 + HMPREF1181_RS09035 0.79 -2.4 408,811 - HMPREF1181_RS09035 0.80 +1.2 408,890 - HMPREF1181_RS09035 0.84 -1.7 408,892 - HMPREF1181_RS09035 0.84 +0.5 408,959 - HMPREF1181_RS09035 0.87 -1.4 409,144 + +1.5 409,144 + +0.7 409,181 + +3.1 409,181 + +1.1 409,227 + +0.8 409,227 + +1.7 409,227 + +1.3 409,238 + +0.7 409,239 - -0.9 409,254 - -2.2 409,254 - -3.9 409,254 - -0.6 409,261 + +1.1 409,264 + +1.4 409,287 + -0.2 409,350 + -0.6 409,350 + +0.7 409,351 - +3.3 409,470 + HMPREF1181_RS09040 0.13 +0.0 409,655 - HMPREF1181_RS09040 0.26 +0.6 409,688 + HMPREF1181_RS09040 0.28 -1.6 409,823 + HMPREF1181_RS09040 0.37 -0.1 409,823 + HMPREF1181_RS09040 0.37 -2.2 409,824 - HMPREF1181_RS09040 0.37 +1.9 409,880 - HMPREF1181_RS09040 0.41 +0.1 410,175 - HMPREF1181_RS09040 0.61 +1.5 410,187 - HMPREF1181_RS09040 0.62 +0.0
Or see this region's nucleotide sequence