Experiment: Arabinoxylan (Rye Flour) 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS07150 and HMPREF1181_RS07155 are separated by 335 nucleotides
HMPREF1181_RS07150: HMPREF1181_RS07150 - DUF3440 domain-containing protein, at 810,799 to 812,079
_RS07150
HMPREF1181_RS07155: HMPREF1181_RS07155 - site-specific integrase, at 812,415 to 813,605
_RS07155
Position (kb) 812
813
814 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 811.431 kb on + strand, within HMPREF1181_RS07150 at 811.432 kb on - strand, within HMPREF1181_RS07150 at 811.433 kb on + strand, within HMPREF1181_RS07150 at 811.433 kb on + strand, within HMPREF1181_RS07150 at 811.434 kb on - strand, within HMPREF1181_RS07150 at 811.434 kb on - strand, within HMPREF1181_RS07150 at 811.434 kb on - strand, within HMPREF1181_RS07150 at 811.466 kb on - strand, within HMPREF1181_RS07150 at 811.470 kb on + strand, within HMPREF1181_RS07150 at 811.478 kb on - strand, within HMPREF1181_RS07150 at 811.605 kb on - strand, within HMPREF1181_RS07150 at 811.692 kb on + strand, within HMPREF1181_RS07150 at 811.692 kb on + strand, within HMPREF1181_RS07150 at 811.693 kb on - strand, within HMPREF1181_RS07150 at 811.740 kb on + strand, within HMPREF1181_RS07150 at 811.780 kb on - strand, within HMPREF1181_RS07150 at 811.805 kb on + strand, within HMPREF1181_RS07150 at 811.805 kb on + strand, within HMPREF1181_RS07150 at 811.809 kb on + strand, within HMPREF1181_RS07150 at 811.810 kb on - strand, within HMPREF1181_RS07150 at 811.853 kb on + strand, within HMPREF1181_RS07150 at 811.854 kb on - strand, within HMPREF1181_RS07150 at 811.876 kb on + strand, within HMPREF1181_RS07150 at 811.877 kb on - strand, within HMPREF1181_RS07150 at 811.929 kb on - strand, within HMPREF1181_RS07150 at 811.968 kb on + strand at 811.971 kb on - strand at 811.971 kb on - strand at 811.971 kb on - strand at 811.971 kb on - strand at 811.975 kb on - strand at 811.992 kb on + strand at 812.003 kb on - strand at 812.156 kb on - strand at 812.163 kb on + strand at 812.163 kb on + strand at 812.231 kb on - strand at 812.256 kb on + strand at 812.262 kb on + strand at 812.267 kb on - strand at 812.267 kb on - strand at 812.401 kb on - strand at 812.401 kb on - strand at 812.484 kb on + strand at 812.487 kb on + strand at 812.488 kb on - strand at 812.495 kb on + strand at 812.523 kb on - strand at 812.603 kb on + strand, within HMPREF1181_RS07155 at 812.604 kb on - strand, within HMPREF1181_RS07155 at 812.714 kb on + strand, within HMPREF1181_RS07155 at 812.727 kb on + strand, within HMPREF1181_RS07155 at 812.727 kb on + strand, within HMPREF1181_RS07155 at 812.731 kb on - strand, within HMPREF1181_RS07155 at 812.850 kb on + strand, within HMPREF1181_RS07155 at 813.023 kb on - strand, within HMPREF1181_RS07155 at 813.038 kb on + strand, within HMPREF1181_RS07155 at 813.038 kb on + strand, within HMPREF1181_RS07155 at 813.039 kb on - strand, within HMPREF1181_RS07155 at 813.039 kb on - strand, within HMPREF1181_RS07155 at 813.039 kb on - strand, within HMPREF1181_RS07155 at 813.040 kb on + strand, within HMPREF1181_RS07155 at 813.161 kb on + strand, within HMPREF1181_RS07155 at 813.162 kb on - strand, within HMPREF1181_RS07155 at 813.162 kb on - strand, within HMPREF1181_RS07155 at 813.162 kb on - strand, within HMPREF1181_RS07155 at 813.233 kb on + strand, within HMPREF1181_RS07155 at 813.234 kb on - strand, within HMPREF1181_RS07155 at 813.263 kb on - strand, within HMPREF1181_RS07155 at 813.324 kb on - strand, within HMPREF1181_RS07155 at 813.327 kb on + strand, within HMPREF1181_RS07155 at 813.328 kb on - strand, within HMPREF1181_RS07155 at 813.361 kb on - strand, within HMPREF1181_RS07155 at 813.388 kb on - strand, within HMPREF1181_RS07155 at 813.438 kb on - strand, within HMPREF1181_RS07155 at 813.438 kb on - strand, within HMPREF1181_RS07155 at 813.481 kb on + strand, within HMPREF1181_RS07155 at 813.482 kb on - strand, within HMPREF1181_RS07155 at 813.494 kb on + strand at 813.495 kb on - strand at 813.577 kb on + strand at 813.582 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/mL (C) remove 811,431 + HMPREF1181_RS07150 0.49 +0.7 811,432 - HMPREF1181_RS07150 0.49 -3.3 811,433 + HMPREF1181_RS07150 0.49 -1.7 811,433 + HMPREF1181_RS07150 0.49 +1.6 811,434 - HMPREF1181_RS07150 0.50 -0.6 811,434 - HMPREF1181_RS07150 0.50 -3.4 811,434 - HMPREF1181_RS07150 0.50 +1.7 811,466 - HMPREF1181_RS07150 0.52 +1.7 811,470 + HMPREF1181_RS07150 0.52 +2.0 811,478 - HMPREF1181_RS07150 0.53 +0.8 811,605 - HMPREF1181_RS07150 0.63 +0.3 811,692 + HMPREF1181_RS07150 0.70 +0.1 811,692 + HMPREF1181_RS07150 0.70 -0.8 811,693 - HMPREF1181_RS07150 0.70 -2.7 811,740 + HMPREF1181_RS07150 0.73 +1.6 811,780 - HMPREF1181_RS07150 0.77 -3.5 811,805 + HMPREF1181_RS07150 0.79 -3.2 811,805 + HMPREF1181_RS07150 0.79 -3.5 811,809 + HMPREF1181_RS07150 0.79 +0.1 811,810 - HMPREF1181_RS07150 0.79 +0.6 811,853 + HMPREF1181_RS07150 0.82 +1.0 811,854 - HMPREF1181_RS07150 0.82 -0.5 811,876 + HMPREF1181_RS07150 0.84 -1.9 811,877 - HMPREF1181_RS07150 0.84 -2.0 811,929 - HMPREF1181_RS07150 0.88 +0.9 811,968 + -1.9 811,971 - -0.8 811,971 - -1.3 811,971 - +1.8 811,971 - -1.6 811,975 - +3.2 811,992 + -4.2 812,003 - -3.1 812,156 - -0.3 812,163 + -0.8 812,163 + +0.4 812,231 - -3.7 812,256 + +0.6 812,262 + +1.3 812,267 - +0.3 812,267 - -1.7 812,401 - -1.9 812,401 - +1.2 812,484 + -2.6 812,487 + -1.8 812,488 - -0.7 812,495 + -0.9 812,523 - +1.1 812,603 + HMPREF1181_RS07155 0.16 -2.2 812,604 - HMPREF1181_RS07155 0.16 +0.2 812,714 + HMPREF1181_RS07155 0.25 +3.5 812,727 + HMPREF1181_RS07155 0.26 +0.8 812,727 + HMPREF1181_RS07155 0.26 +2.7 812,731 - HMPREF1181_RS07155 0.27 +1.6 812,850 + HMPREF1181_RS07155 0.37 +0.9 813,023 - HMPREF1181_RS07155 0.51 +1.8 813,038 + HMPREF1181_RS07155 0.52 -0.0 813,038 + HMPREF1181_RS07155 0.52 +0.6 813,039 - HMPREF1181_RS07155 0.52 +2.2 813,039 - HMPREF1181_RS07155 0.52 +3.2 813,039 - HMPREF1181_RS07155 0.52 -2.8 813,040 + HMPREF1181_RS07155 0.52 +0.3 813,161 + HMPREF1181_RS07155 0.63 +1.5 813,162 - HMPREF1181_RS07155 0.63 -0.5 813,162 - HMPREF1181_RS07155 0.63 +1.4 813,162 - HMPREF1181_RS07155 0.63 -0.7 813,233 + HMPREF1181_RS07155 0.69 +0.1 813,234 - HMPREF1181_RS07155 0.69 -2.2 813,263 - HMPREF1181_RS07155 0.71 +0.4 813,324 - HMPREF1181_RS07155 0.76 +0.8 813,327 + HMPREF1181_RS07155 0.77 +1.9 813,328 - HMPREF1181_RS07155 0.77 -2.1 813,361 - HMPREF1181_RS07155 0.79 +1.9 813,388 - HMPREF1181_RS07155 0.82 +1.4 813,438 - HMPREF1181_RS07155 0.86 -0.4 813,438 - HMPREF1181_RS07155 0.86 -2.9 813,481 + HMPREF1181_RS07155 0.90 +3.6 813,482 - HMPREF1181_RS07155 0.90 -3.7 813,494 + +0.4 813,495 - +1.2 813,577 + +0.0 813,582 + -1.5
Or see this region's nucleotide sequence