Experiment: Arabinoxylan (Rye Flour) 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS03490 and HMPREF1181_RS03495 are separated by 131 nucleotides HMPREF1181_RS03495 and HMPREF1181_RS03500 are separated by 31 nucleotides
HMPREF1181_RS03490: HMPREF1181_RS03490 - glycoside hydrolase family 28 protein, at 885,383 to 886,903
_RS03490
HMPREF1181_RS03495: HMPREF1181_RS03495 - rhamnulokinase, at 887,035 to 888,501
_RS03495
HMPREF1181_RS03500: HMPREF1181_RS03500 - L-rhamnose isomerase, at 888,533 to 889,786
_RS03500
Position (kb) 887
888
889 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 886.091 kb on - strand, within HMPREF1181_RS03490 at 886.202 kb on + strand, within HMPREF1181_RS03490 at 886.351 kb on - strand, within HMPREF1181_RS03490 at 886.376 kb on - strand, within HMPREF1181_RS03490 at 886.376 kb on - strand, within HMPREF1181_RS03490 at 886.426 kb on + strand, within HMPREF1181_RS03490 at 886.504 kb on + strand, within HMPREF1181_RS03490 at 886.537 kb on + strand, within HMPREF1181_RS03490 at 886.538 kb on - strand, within HMPREF1181_RS03490 at 886.577 kb on + strand, within HMPREF1181_RS03490 at 886.581 kb on - strand, within HMPREF1181_RS03490 at 886.638 kb on + strand, within HMPREF1181_RS03490 at 886.638 kb on + strand, within HMPREF1181_RS03490 at 886.702 kb on - strand, within HMPREF1181_RS03490 at 886.783 kb on + strand at 886.785 kb on + strand at 886.786 kb on - strand at 886.786 kb on - strand at 886.816 kb on + strand at 886.817 kb on - strand at 886.856 kb on - strand at 886.901 kb on + strand at 886.901 kb on + strand at 886.918 kb on + strand at 886.921 kb on + strand at 886.968 kb on - strand at 886.968 kb on - strand at 886.971 kb on + strand at 887.183 kb on + strand, within HMPREF1181_RS03495 at 887.183 kb on + strand, within HMPREF1181_RS03495 at 887.183 kb on + strand, within HMPREF1181_RS03495 at 887.183 kb on + strand, within HMPREF1181_RS03495 at 887.184 kb on - strand, within HMPREF1181_RS03495 at 887.185 kb on + strand, within HMPREF1181_RS03495 at 887.185 kb on + strand, within HMPREF1181_RS03495 at 887.186 kb on - strand, within HMPREF1181_RS03495 at 887.186 kb on - strand, within HMPREF1181_RS03495 at 887.251 kb on - strand, within HMPREF1181_RS03495 at 887.268 kb on + strand, within HMPREF1181_RS03495 at 887.295 kb on - strand, within HMPREF1181_RS03495 at 887.299 kb on - strand, within HMPREF1181_RS03495 at 887.333 kb on - strand, within HMPREF1181_RS03495 at 887.399 kb on - strand, within HMPREF1181_RS03495 at 887.452 kb on - strand, within HMPREF1181_RS03495 at 887.463 kb on + strand, within HMPREF1181_RS03495 at 887.466 kb on + strand, within HMPREF1181_RS03495 at 887.466 kb on + strand, within HMPREF1181_RS03495 at 887.524 kb on + strand, within HMPREF1181_RS03495 at 887.554 kb on + strand, within HMPREF1181_RS03495 at 887.555 kb on - strand, within HMPREF1181_RS03495 at 887.555 kb on - strand, within HMPREF1181_RS03495 at 887.644 kb on - strand, within HMPREF1181_RS03495 at 887.724 kb on + strand, within HMPREF1181_RS03495 at 887.932 kb on - strand, within HMPREF1181_RS03495 at 888.039 kb on + strand, within HMPREF1181_RS03495 at 888.039 kb on + strand, within HMPREF1181_RS03495 at 888.154 kb on - strand, within HMPREF1181_RS03495 at 888.178 kb on + strand, within HMPREF1181_RS03495 at 888.402 kb on - strand at 888.467 kb on - strand at 888.470 kb on + strand at 888.470 kb on + strand at 888.470 kb on + strand at 888.500 kb on - strand at 888.517 kb on + strand at 888.518 kb on - strand at 888.518 kb on - strand at 888.546 kb on + strand at 888.561 kb on - strand at 888.716 kb on - strand, within HMPREF1181_RS03500 at 888.721 kb on + strand, within HMPREF1181_RS03500 at 888.722 kb on - strand, within HMPREF1181_RS03500 at 888.722 kb on - strand, within HMPREF1181_RS03500 at 888.787 kb on + strand, within HMPREF1181_RS03500 at 888.952 kb on + strand, within HMPREF1181_RS03500 at 889.015 kb on + strand, within HMPREF1181_RS03500 at 889.016 kb on - strand, within HMPREF1181_RS03500 at 889.123 kb on + strand, within HMPREF1181_RS03500 at 889.124 kb on - strand, within HMPREF1181_RS03500 at 889.208 kb on - strand, within HMPREF1181_RS03500 at 889.208 kb on - strand, within HMPREF1181_RS03500 at 889.212 kb on + strand, within HMPREF1181_RS03500 at 889.236 kb on - strand, within HMPREF1181_RS03500 at 889.238 kb on - strand, within HMPREF1181_RS03500 at 889.293 kb on + strand, within HMPREF1181_RS03500 at 889.321 kb on + strand, within HMPREF1181_RS03500 at 889.340 kb on - strand, within HMPREF1181_RS03500 at 889.386 kb on + strand, within HMPREF1181_RS03500 at 889.387 kb on - strand, within HMPREF1181_RS03500 at 889.423 kb on + strand, within HMPREF1181_RS03500
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/mL (C) remove 886,091 - HMPREF1181_RS03490 0.47 +1.3 886,202 + HMPREF1181_RS03490 0.54 +0.3 886,351 - HMPREF1181_RS03490 0.64 +0.2 886,376 - HMPREF1181_RS03490 0.65 -2.5 886,376 - HMPREF1181_RS03490 0.65 -1.9 886,426 + HMPREF1181_RS03490 0.69 -0.8 886,504 + HMPREF1181_RS03490 0.74 -1.0 886,537 + HMPREF1181_RS03490 0.76 -0.2 886,538 - HMPREF1181_RS03490 0.76 +0.5 886,577 + HMPREF1181_RS03490 0.79 -1.1 886,581 - HMPREF1181_RS03490 0.79 +0.1 886,638 + HMPREF1181_RS03490 0.83 -1.2 886,638 + HMPREF1181_RS03490 0.83 -3.5 886,702 - HMPREF1181_RS03490 0.87 +0.0 886,783 + -2.8 886,785 + -0.8 886,786 - -1.8 886,786 - -1.3 886,816 + +2.5 886,817 - +0.8 886,856 - -4.4 886,901 + -1.6 886,901 + -1.4 886,918 + -2.7 886,921 + +2.7 886,968 - -0.1 886,968 - -3.3 886,971 + -1.0 887,183 + HMPREF1181_RS03495 0.10 -0.1 887,183 + HMPREF1181_RS03495 0.10 -0.9 887,183 + HMPREF1181_RS03495 0.10 +0.5 887,183 + HMPREF1181_RS03495 0.10 -2.8 887,184 - HMPREF1181_RS03495 0.10 -1.4 887,185 + HMPREF1181_RS03495 0.10 -0.9 887,185 + HMPREF1181_RS03495 0.10 -2.3 887,186 - HMPREF1181_RS03495 0.10 -0.1 887,186 - HMPREF1181_RS03495 0.10 +1.8 887,251 - HMPREF1181_RS03495 0.15 +1.8 887,268 + HMPREF1181_RS03495 0.16 -3.5 887,295 - HMPREF1181_RS03495 0.18 -2.7 887,299 - HMPREF1181_RS03495 0.18 -1.9 887,333 - HMPREF1181_RS03495 0.20 -0.5 887,399 - HMPREF1181_RS03495 0.25 +1.1 887,452 - HMPREF1181_RS03495 0.28 -1.3 887,463 + HMPREF1181_RS03495 0.29 -0.6 887,466 + HMPREF1181_RS03495 0.29 +1.1 887,466 + HMPREF1181_RS03495 0.29 -1.2 887,524 + HMPREF1181_RS03495 0.33 +2.2 887,554 + HMPREF1181_RS03495 0.35 +1.7 887,555 - HMPREF1181_RS03495 0.35 -1.5 887,555 - HMPREF1181_RS03495 0.35 +0.1 887,644 - HMPREF1181_RS03495 0.42 -0.7 887,724 + HMPREF1181_RS03495 0.47 -4.3 887,932 - HMPREF1181_RS03495 0.61 -3.4 888,039 + HMPREF1181_RS03495 0.68 -0.6 888,039 + HMPREF1181_RS03495 0.68 +3.4 888,154 - HMPREF1181_RS03495 0.76 -0.1 888,178 + HMPREF1181_RS03495 0.78 -1.3 888,402 - -2.5 888,467 - +0.2 888,470 + +0.3 888,470 + -1.5 888,470 + +1.6 888,500 - -1.5 888,517 + +1.4 888,518 - +0.5 888,518 - -1.8 888,546 + -1.9 888,561 - +2.0 888,716 - HMPREF1181_RS03500 0.15 -0.6 888,721 + HMPREF1181_RS03500 0.15 +0.4 888,722 - HMPREF1181_RS03500 0.15 -0.1 888,722 - HMPREF1181_RS03500 0.15 -0.2 888,787 + HMPREF1181_RS03500 0.20 -0.0 888,952 + HMPREF1181_RS03500 0.33 -3.5 889,015 + HMPREF1181_RS03500 0.38 -0.6 889,016 - HMPREF1181_RS03500 0.39 -0.2 889,123 + HMPREF1181_RS03500 0.47 -0.2 889,124 - HMPREF1181_RS03500 0.47 +1.1 889,208 - HMPREF1181_RS03500 0.54 +1.0 889,208 - HMPREF1181_RS03500 0.54 -1.0 889,212 + HMPREF1181_RS03500 0.54 -2.9 889,236 - HMPREF1181_RS03500 0.56 -0.4 889,238 - HMPREF1181_RS03500 0.56 +0.5 889,293 + HMPREF1181_RS03500 0.61 -1.8 889,321 + HMPREF1181_RS03500 0.63 +1.4 889,340 - HMPREF1181_RS03500 0.64 +0.2 889,386 + HMPREF1181_RS03500 0.68 +0.9 889,387 - HMPREF1181_RS03500 0.68 +1.8 889,423 + HMPREF1181_RS03500 0.71 -2.8
Or see this region's nucleotide sequence