Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF979

Experiment: Ying_sugar7 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF978 and GFF979 overlap by 4 nucleotidesGFF979 and GFF980 are separated by 40 nucleotides GFF978 - Butyryl-CoA dehydrogenase (EC 1.3.99.2), at 716,378 to 717,544 GFF978 GFF979 - Enoyl-CoA hydratase (EC 4.2.1.17), at 717,541 to 718,329 GFF979 GFF980 - Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4), at 718,370 to 719,977 GFF980 Position (kb) 717 718 719Strain fitness (log2 ratio) -2 -1 0 1 2at 716.546 kb on + strand, within GFF978at 716.603 kb on + strand, within GFF978at 716.603 kb on + strand, within GFF978at 716.604 kb on - strand, within GFF978at 716.624 kb on + strand, within GFF978at 716.624 kb on + strand, within GFF978at 716.624 kb on + strand, within GFF978at 716.624 kb on + strand, within GFF978at 716.624 kb on + strand, within GFF978at 716.625 kb on - strand, within GFF978at 716.625 kb on - strand, within GFF978at 716.625 kb on - strand, within GFF978at 716.810 kb on + strand, within GFF978at 716.810 kb on + strand, within GFF978at 716.977 kb on + strand, within GFF978at 716.977 kb on + strand, within GFF978at 716.978 kb on - strand, within GFF978at 717.159 kb on - strand, within GFF978at 717.159 kb on - strand, within GFF978at 717.159 kb on - strand, within GFF978at 717.200 kb on + strand, within GFF978at 717.201 kb on - strand, within GFF978at 717.201 kb on - strand, within GFF978at 717.266 kb on + strand, within GFF978at 717.600 kb on - strandat 717.751 kb on + strand, within GFF979at 717.802 kb on + strand, within GFF979at 717.802 kb on + strand, within GFF979at 717.803 kb on - strand, within GFF979at 717.803 kb on - strand, within GFF979at 717.803 kb on - strand, within GFF979at 717.803 kb on - strand, within GFF979at 718.090 kb on + strand, within GFF979at 718.090 kb on + strand, within GFF979at 718.090 kb on + strand, within GFF979at 718.090 kb on + strand, within GFF979at 718.090 kb on + strand, within GFF979at 718.090 kb on + strand, within GFF979at 718.091 kb on - strand, within GFF979at 718.091 kb on - strand, within GFF979at 718.091 kb on - strand, within GFF979at 718.091 kb on - strand, within GFF979at 718.091 kb on - strand, within GFF979at 718.132 kb on + strand, within GFF979at 718.308 kb on + strandat 718.309 kb on - strandat 718.309 kb on - strandat 718.355 kb on + strandat 718.356 kb on - strandat 718.369 kb on + strandat 718.369 kb on + strandat 718.369 kb on + strandat 718.370 kb on - strandat 718.370 kb on - strandat 718.370 kb on - strandat 718.370 kb on - strandat 718.370 kb on - strandat 718.370 kb on - strandat 718.370 kb on - strandat 718.371 kb on - strandat 718.393 kb on - strandat 718.393 kb on - strandat 718.396 kb on + strandat 718.434 kb on - strandat 718.581 kb on + strand, within GFF980at 718.613 kb on + strand, within GFF980at 718.613 kb on + strand, within GFF980at 718.613 kb on + strand, within GFF980at 718.613 kb on + strand, within GFF980at 718.613 kb on + strand, within GFF980at 718.613 kb on + strand, within GFF980at 718.719 kb on - strand, within GFF980at 718.721 kb on + strand, within GFF980at 718.721 kb on + strand, within GFF980at 718.881 kb on + strand, within GFF980at 718.881 kb on + strand, within GFF980at 718.882 kb on - strand, within GFF980at 718.882 kb on - strand, within GFF980at 718.882 kb on - strand, within GFF980at 718.949 kb on + strand, within GFF980at 718.949 kb on + strand, within GFF980at 718.950 kb on - strand, within GFF980at 718.950 kb on - strand, within GFF980at 718.997 kb on + strand, within GFF980at 718.997 kb on + strand, within GFF980at 718.998 kb on - strand, within GFF980at 718.998 kb on - strand, within GFF980at 718.999 kb on + strand, within GFF980at 718.999 kb on + strand, within GFF980at 718.999 kb on + strand, within GFF980at 718.999 kb on + strand, within GFF980at 718.999 kb on + strand, within GFF980at 719.000 kb on - strand, within GFF980at 719.000 kb on - strand, within GFF980at 719.000 kb on - strand, within GFF980at 719.000 kb on - strand, within GFF980at 719.003 kb on + strand, within GFF980at 719.003 kb on + strand, within GFF980at 719.003 kb on + strand, within GFF980at 719.004 kb on - strand, within GFF980at 719.110 kb on + strand, within GFF980at 719.110 kb on + strand, within GFF980at 719.110 kb on + strand, within GFF980at 719.237 kb on + strand, within GFF980at 719.237 kb on + strand, within GFF980at 719.238 kb on - strand, within GFF980

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 3
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716,546 + GFF978 0.14 +0.2
716,603 + GFF978 0.19 -1.0
716,603 + GFF978 0.19 +0.3
716,604 - GFF978 0.19 +0.3
716,624 + GFF978 0.21 +1.0
716,624 + GFF978 0.21 +0.3
716,624 + GFF978 0.21 -1.3
716,624 + GFF978 0.21 +1.3
716,624 + GFF978 0.21 +0.0
716,625 - GFF978 0.21 +0.3
716,625 - GFF978 0.21 +0.1
716,625 - GFF978 0.21 -0.7
716,810 + GFF978 0.37 +0.8
716,810 + GFF978 0.37 -0.0
716,977 + GFF978 0.51 +0.1
716,977 + GFF978 0.51 +0.6
716,978 - GFF978 0.51 -1.2
717,159 - GFF978 0.67 +0.2
717,159 - GFF978 0.67 +0.2
717,159 - GFF978 0.67 +0.4
717,200 + GFF978 0.70 -0.3
717,201 - GFF978 0.71 +0.1
717,201 - GFF978 0.71 -1.2
717,266 + GFF978 0.76 -0.5
717,600 - +0.5
717,751 + GFF979 0.27 +0.6
717,802 + GFF979 0.33 -0.5
717,802 + GFF979 0.33 -0.3
717,803 - GFF979 0.33 -0.2
717,803 - GFF979 0.33 -0.2
717,803 - GFF979 0.33 +0.4
717,803 - GFF979 0.33 +1.8
718,090 + GFF979 0.70 -0.3
718,090 + GFF979 0.70 -0.4
718,090 + GFF979 0.70 -0.4
718,090 + GFF979 0.70 +0.1
718,090 + GFF979 0.70 +0.1
718,090 + GFF979 0.70 -0.1
718,091 - GFF979 0.70 -0.1
718,091 - GFF979 0.70 -0.0
718,091 - GFF979 0.70 -2.3
718,091 - GFF979 0.70 -0.3
718,091 - GFF979 0.70 -0.1
718,132 + GFF979 0.75 -0.4
718,308 + +0.8
718,309 - +0.3
718,309 - -0.2
718,355 + +0.2
718,356 - +0.7
718,369 + +0.3
718,369 + +0.6
718,369 + -0.9
718,370 - -0.7
718,370 - -0.2
718,370 - -0.2
718,370 - +0.3
718,370 - +0.2
718,370 - +0.4
718,370 - -0.4
718,371 - +0.4
718,393 - +0.8
718,393 - -0.2
718,396 + +0.3
718,434 - -0.6
718,581 + GFF980 0.13 +1.4
718,613 + GFF980 0.15 +0.3
718,613 + GFF980 0.15 +1.2
718,613 + GFF980 0.15 -0.2
718,613 + GFF980 0.15 +0.1
718,613 + GFF980 0.15 -0.6
718,613 + GFF980 0.15 -0.7
718,719 - GFF980 0.22 -0.0
718,721 + GFF980 0.22 +0.2
718,721 + GFF980 0.22 +0.7
718,881 + GFF980 0.32 -0.5
718,881 + GFF980 0.32 -0.0
718,882 - GFF980 0.32 +0.2
718,882 - GFF980 0.32 -0.2
718,882 - GFF980 0.32 +0.1
718,949 + GFF980 0.36 +0.4
718,949 + GFF980 0.36 -0.9
718,950 - GFF980 0.36 +0.2
718,950 - GFF980 0.36 -0.5
718,997 + GFF980 0.39 +0.4
718,997 + GFF980 0.39 +0.5
718,998 - GFF980 0.39 +0.6
718,998 - GFF980 0.39 +0.5
718,999 + GFF980 0.39 +0.4
718,999 + GFF980 0.39 -0.4
718,999 + GFF980 0.39 -0.1
718,999 + GFF980 0.39 -0.0
718,999 + GFF980 0.39 +0.5
719,000 - GFF980 0.39 +0.4
719,000 - GFF980 0.39 +0.1
719,000 - GFF980 0.39 +0.0
719,000 - GFF980 0.39 +0.3
719,003 + GFF980 0.39 -0.4
719,003 + GFF980 0.39 -0.2
719,003 + GFF980 0.39 +0.6
719,004 - GFF980 0.39 +0.3
719,110 + GFF980 0.46 +0.5
719,110 + GFF980 0.46 -0.0
719,110 + GFF980 0.46 -0.0
719,237 + GFF980 0.54 +0.3
719,237 + GFF980 0.54 +0.5
719,238 - GFF980 0.54 -1.2

Or see this region's nucleotide sequence