Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF977

Experiment: Ying_sugar7 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF976 and GFF977 are separated by 18 nucleotidesGFF977 and GFF978 are separated by 156 nucleotides GFF976 - Butyryl-CoA dehydrogenase (EC 1.3.99.2), at 712,982 to 714,148 GFF976 GFF977 - 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34), at 714,167 to 716,221 GFF977 GFF978 - Butyryl-CoA dehydrogenase (EC 1.3.99.2), at 716,378 to 717,544 GFF978 Position (kb) 714 715 716 717Strain fitness (log2 ratio) -2 -1 0 1 2at 713.175 kb on + strand, within GFF976at 713.175 kb on + strand, within GFF976at 713.176 kb on - strand, within GFF976at 713.176 kb on - strand, within GFF976at 713.176 kb on - strand, within GFF976at 713.220 kb on + strand, within GFF976at 713.297 kb on - strand, within GFF976at 713.346 kb on + strand, within GFF976at 713.346 kb on + strand, within GFF976at 713.346 kb on + strand, within GFF976at 713.347 kb on - strand, within GFF976at 713.347 kb on - strand, within GFF976at 713.347 kb on - strand, within GFF976at 713.357 kb on + strand, within GFF976at 713.357 kb on + strand, within GFF976at 713.436 kb on + strand, within GFF976at 713.437 kb on - strand, within GFF976at 713.474 kb on + strand, within GFF976at 713.580 kb on + strand, within GFF976at 713.580 kb on + strand, within GFF976at 713.580 kb on + strand, within GFF976at 713.581 kb on - strand, within GFF976at 713.581 kb on - strand, within GFF976at 713.703 kb on + strand, within GFF976at 713.703 kb on + strand, within GFF976at 713.704 kb on - strand, within GFF976at 713.974 kb on - strand, within GFF976at 714.113 kb on + strandat 714.114 kb on - strandat 714.351 kb on - strandat 714.397 kb on - strand, within GFF977at 714.466 kb on + strand, within GFF977at 714.466 kb on + strand, within GFF977at 714.467 kb on - strand, within GFF977at 714.467 kb on - strand, within GFF977at 714.467 kb on - strand, within GFF977at 714.575 kb on - strand, within GFF977at 714.631 kb on + strand, within GFF977at 714.631 kb on + strand, within GFF977at 714.665 kb on + strand, within GFF977at 714.665 kb on + strand, within GFF977at 714.665 kb on + strand, within GFF977at 714.665 kb on + strand, within GFF977at 714.666 kb on - strand, within GFF977at 714.744 kb on + strand, within GFF977at 714.745 kb on - strand, within GFF977at 714.745 kb on - strand, within GFF977at 714.839 kb on + strand, within GFF977at 714.839 kb on + strand, within GFF977at 714.839 kb on + strand, within GFF977at 714.839 kb on + strand, within GFF977at 714.963 kb on - strand, within GFF977at 715.170 kb on + strand, within GFF977at 715.170 kb on + strand, within GFF977at 715.170 kb on + strand, within GFF977at 715.170 kb on + strand, within GFF977at 715.170 kb on + strand, within GFF977at 715.419 kb on + strand, within GFF977at 715.420 kb on - strand, within GFF977at 715.420 kb on - strand, within GFF977at 715.420 kb on - strand, within GFF977at 715.420 kb on - strand, within GFF977at 715.420 kb on - strand, within GFF977at 715.420 kb on - strand, within GFF977at 715.462 kb on + strand, within GFF977at 715.564 kb on - strand, within GFF977at 715.705 kb on - strand, within GFF977at 715.769 kb on + strand, within GFF977at 715.769 kb on + strand, within GFF977at 715.769 kb on + strand, within GFF977at 715.769 kb on + strand, within GFF977at 715.769 kb on + strand, within GFF977at 715.769 kb on + strand, within GFF977at 715.769 kb on + strand, within GFF977at 715.769 kb on + strand, within GFF977at 715.770 kb on - strand, within GFF977at 715.770 kb on - strand, within GFF977at 715.770 kb on - strand, within GFF977at 715.773 kb on + strand, within GFF977at 715.774 kb on - strand, within GFF977at 715.979 kb on - strand, within GFF977at 715.979 kb on - strand, within GFF977at 716.073 kb on + strandat 716.073 kb on + strandat 716.074 kb on - strandat 716.074 kb on - strandat 716.074 kb on - strandat 716.187 kb on - strandat 716.187 kb on - strandat 716.187 kb on - strandat 716.373 kb on + strandat 716.374 kb on - strandat 716.453 kb on + strandat 716.453 kb on + strandat 716.546 kb on + strand, within GFF978at 716.603 kb on + strand, within GFF978at 716.603 kb on + strand, within GFF978at 716.604 kb on - strand, within GFF978at 716.624 kb on + strand, within GFF978at 716.624 kb on + strand, within GFF978at 716.624 kb on + strand, within GFF978at 716.624 kb on + strand, within GFF978at 716.624 kb on + strand, within GFF978at 716.625 kb on - strand, within GFF978at 716.625 kb on - strand, within GFF978at 716.625 kb on - strand, within GFF978at 716.810 kb on + strand, within GFF978at 716.810 kb on + strand, within GFF978at 716.977 kb on + strand, within GFF978at 716.977 kb on + strand, within GFF978at 716.978 kb on - strand, within GFF978at 717.159 kb on - strand, within GFF978at 717.159 kb on - strand, within GFF978at 717.159 kb on - strand, within GFF978at 717.200 kb on + strand, within GFF978at 717.201 kb on - strand, within GFF978at 717.201 kb on - strand, within GFF978

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 3
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713,175 + GFF976 0.17 -0.2
713,175 + GFF976 0.17 -0.1
713,176 - GFF976 0.17 -0.1
713,176 - GFF976 0.17 -1.0
713,176 - GFF976 0.17 +0.1
713,220 + GFF976 0.20 -0.1
713,297 - GFF976 0.27 -0.2
713,346 + GFF976 0.31 +0.4
713,346 + GFF976 0.31 +0.4
713,346 + GFF976 0.31 -1.4
713,347 - GFF976 0.31 +1.0
713,347 - GFF976 0.31 -1.0
713,347 - GFF976 0.31 +0.0
713,357 + GFF976 0.32 -0.4
713,357 + GFF976 0.32 +0.6
713,436 + GFF976 0.39 -0.4
713,437 - GFF976 0.39 -2.0
713,474 + GFF976 0.42 -0.0
713,580 + GFF976 0.51 -0.2
713,580 + GFF976 0.51 +0.6
713,580 + GFF976 0.51 +0.4
713,581 - GFF976 0.51 +0.2
713,581 - GFF976 0.51 -1.0
713,703 + GFF976 0.62 +0.8
713,703 + GFF976 0.62 +0.5
713,704 - GFF976 0.62 -0.1
713,974 - GFF976 0.85 +1.4
714,113 + -0.3
714,114 - -0.0
714,351 - +0.1
714,397 - GFF977 0.11 +0.4
714,466 + GFF977 0.15 -0.1
714,466 + GFF977 0.15 -0.6
714,467 - GFF977 0.15 +0.1
714,467 - GFF977 0.15 +0.4
714,467 - GFF977 0.15 +0.2
714,575 - GFF977 0.20 -1.0
714,631 + GFF977 0.23 +0.7
714,631 + GFF977 0.23 -0.6
714,665 + GFF977 0.24 +2.7
714,665 + GFF977 0.24 -0.2
714,665 + GFF977 0.24 +0.4
714,665 + GFF977 0.24 -0.6
714,666 - GFF977 0.24 +1.1
714,744 + GFF977 0.28 +0.1
714,745 - GFF977 0.28 +0.0
714,745 - GFF977 0.28 +1.0
714,839 + GFF977 0.33 +0.6
714,839 + GFF977 0.33 +1.6
714,839 + GFF977 0.33 +0.2
714,839 + GFF977 0.33 +0.1
714,963 - GFF977 0.39 -0.0
715,170 + GFF977 0.49 -0.7
715,170 + GFF977 0.49 +0.0
715,170 + GFF977 0.49 +0.0
715,170 + GFF977 0.49 -0.0
715,170 + GFF977 0.49 -0.1
715,419 + GFF977 0.61 -1.6
715,420 - GFF977 0.61 -0.0
715,420 - GFF977 0.61 -0.0
715,420 - GFF977 0.61 -0.2
715,420 - GFF977 0.61 -0.2
715,420 - GFF977 0.61 +0.2
715,420 - GFF977 0.61 -0.5
715,462 + GFF977 0.63 -1.5
715,564 - GFF977 0.68 -0.8
715,705 - GFF977 0.75 +0.8
715,769 + GFF977 0.78 -0.2
715,769 + GFF977 0.78 -0.6
715,769 + GFF977 0.78 -0.3
715,769 + GFF977 0.78 +0.4
715,769 + GFF977 0.78 +0.3
715,769 + GFF977 0.78 -1.5
715,769 + GFF977 0.78 -0.7
715,769 + GFF977 0.78 -0.3
715,770 - GFF977 0.78 -1.2
715,770 - GFF977 0.78 +1.8
715,770 - GFF977 0.78 -0.0
715,773 + GFF977 0.78 +0.4
715,774 - GFF977 0.78 +0.3
715,979 - GFF977 0.88 -0.2
715,979 - GFF977 0.88 -0.2
716,073 + -0.7
716,073 + +0.1
716,074 - -1.2
716,074 - -0.9
716,074 - +0.3
716,187 - -0.4
716,187 - -0.2
716,187 - -0.1
716,373 + +1.0
716,374 - +0.3
716,453 + +0.3
716,453 + +0.3
716,546 + GFF978 0.14 +0.2
716,603 + GFF978 0.19 -1.0
716,603 + GFF978 0.19 +0.3
716,604 - GFF978 0.19 +0.3
716,624 + GFF978 0.21 +1.0
716,624 + GFF978 0.21 +0.3
716,624 + GFF978 0.21 -1.3
716,624 + GFF978 0.21 +1.3
716,624 + GFF978 0.21 +0.0
716,625 - GFF978 0.21 +0.3
716,625 - GFF978 0.21 +0.1
716,625 - GFF978 0.21 -0.7
716,810 + GFF978 0.37 +0.8
716,810 + GFF978 0.37 -0.0
716,977 + GFF978 0.51 +0.1
716,977 + GFF978 0.51 +0.6
716,978 - GFF978 0.51 -1.2
717,159 - GFF978 0.67 +0.2
717,159 - GFF978 0.67 +0.2
717,159 - GFF978 0.67 +0.4
717,200 + GFF978 0.70 -0.3
717,201 - GFF978 0.71 +0.1
717,201 - GFF978 0.71 -1.2

Or see this region's nucleotide sequence