Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF968

Experiment: Ying_sugar7 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF967 and GFF968 are separated by 9 nucleotidesGFF968 and GFF969 are separated by 66 nucleotidesGFF969 and GFF970 are separated by 51 nucleotides GFF967 - CAIB/BAIF family protein, at 703,810 to 705,027 GFF967 GFF968 - Butyryl-CoA dehydrogenase (EC 1.3.99.2), at 705,037 to 706,203 GFF968 GFF969 - Enoyl-CoA hydratase (EC 4.2.1.17), at 706,270 to 707,073 GFF969 GFF970 - MaoC-like dehydratase, at 707,125 to 707,982 GFF970 Position (kb) 705 706 707Strain fitness (log2 ratio) -3 -2 -1 0 1at 704.083 kb on + strand, within GFF967at 704.084 kb on - strand, within GFF967at 704.084 kb on - strand, within GFF967at 704.131 kb on + strand, within GFF967at 704.131 kb on + strand, within GFF967at 704.132 kb on - strand, within GFF967at 704.297 kb on + strand, within GFF967at 704.297 kb on + strand, within GFF967at 704.399 kb on + strand, within GFF967at 704.400 kb on - strand, within GFF967at 704.458 kb on + strand, within GFF967at 704.467 kb on + strand, within GFF967at 704.468 kb on - strand, within GFF967at 704.586 kb on - strand, within GFF967at 704.678 kb on + strand, within GFF967at 704.825 kb on + strand, within GFF967at 704.826 kb on - strand, within GFF967at 704.826 kb on - strand, within GFF967at 704.826 kb on - strand, within GFF967at 704.829 kb on - strand, within GFF967at 705.042 kb on - strandat 705.042 kb on - strandat 705.077 kb on + strandat 705.077 kb on + strandat 705.077 kb on + strandat 705.134 kb on + strandat 705.143 kb on + strandat 705.144 kb on - strandat 705.153 kb on - strandat 705.153 kb on - strandat 705.230 kb on + strand, within GFF968at 705.230 kb on + strand, within GFF968at 705.231 kb on - strand, within GFF968at 705.231 kb on - strand, within GFF968at 705.405 kb on - strand, within GFF968at 705.445 kb on - strand, within GFF968at 705.445 kb on - strand, within GFF968at 705.710 kb on + strand, within GFF968at 705.710 kb on + strand, within GFF968at 705.710 kb on + strand, within GFF968at 705.711 kb on - strand, within GFF968at 705.737 kb on + strand, within GFF968at 705.737 kb on + strand, within GFF968at 705.738 kb on - strand, within GFF968at 705.738 kb on - strand, within GFF968at 706.112 kb on + strandat 706.113 kb on - strandat 706.124 kb on + strandat 706.149 kb on + strandat 706.149 kb on + strandat 706.150 kb on - strandat 706.160 kb on + strandat 706.166 kb on + strandat 706.166 kb on + strandat 706.167 kb on - strandat 706.167 kb on - strandat 706.574 kb on + strand, within GFF969at 706.575 kb on - strand, within GFF969at 706.575 kb on - strand, within GFF969at 706.575 kb on - strand, within GFF969at 706.577 kb on + strand, within GFF969at 706.577 kb on + strand, within GFF969at 706.577 kb on + strand, within GFF969at 706.578 kb on - strand, within GFF969at 706.578 kb on - strand, within GFF969at 706.578 kb on - strand, within GFF969at 706.578 kb on - strand, within GFF969at 706.666 kb on - strand, within GFF969at 706.784 kb on + strand, within GFF969at 706.784 kb on + strand, within GFF969at 706.785 kb on - strand, within GFF969at 707.066 kb on + strandat 707.067 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 3
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704,083 + GFF967 0.22 -0.2
704,084 - GFF967 0.22 +0.5
704,084 - GFF967 0.22 +0.2
704,131 + GFF967 0.26 -0.1
704,131 + GFF967 0.26 -0.0
704,132 - GFF967 0.26 -0.3
704,297 + GFF967 0.40 -1.0
704,297 + GFF967 0.40 -0.9
704,399 + GFF967 0.48 +0.3
704,400 - GFF967 0.48 +0.3
704,458 + GFF967 0.53 +1.2
704,467 + GFF967 0.54 +1.7
704,468 - GFF967 0.54 -0.7
704,586 - GFF967 0.64 +0.5
704,678 + GFF967 0.71 -0.1
704,825 + GFF967 0.83 -0.1
704,826 - GFF967 0.83 -1.5
704,826 - GFF967 0.83 +0.5
704,826 - GFF967 0.83 +0.3
704,829 - GFF967 0.84 +0.3
705,042 - +0.8
705,042 - +0.3
705,077 + -1.5
705,077 + -0.7
705,077 + +0.4
705,134 + +1.2
705,143 + -0.0
705,144 - -0.2
705,153 - -0.7
705,153 - -0.7
705,230 + GFF968 0.17 -0.7
705,230 + GFF968 0.17 -0.2
705,231 - GFF968 0.17 -1.2
705,231 - GFF968 0.17 -1.2
705,405 - GFF968 0.32 -0.2
705,445 - GFF968 0.35 +0.7
705,445 - GFF968 0.35 -0.2
705,710 + GFF968 0.58 -0.4
705,710 + GFF968 0.58 +1.3
705,710 + GFF968 0.58 -0.3
705,711 - GFF968 0.58 -0.1
705,737 + GFF968 0.60 -1.5
705,737 + GFF968 0.60 +0.0
705,738 - GFF968 0.60 +0.3
705,738 - GFF968 0.60 +0.2
706,112 + -0.5
706,113 - -0.2
706,124 + -0.6
706,149 + -2.9
706,149 + -0.1
706,150 - +0.1
706,160 + -1.2
706,166 + +0.4
706,166 + -0.7
706,167 - +0.6
706,167 - +0.4
706,574 + GFF969 0.38 -0.7
706,575 - GFF969 0.38 +0.3
706,575 - GFF969 0.38 -0.7
706,575 - GFF969 0.38 -0.2
706,577 + GFF969 0.38 +0.1
706,577 + GFF969 0.38 +0.6
706,577 + GFF969 0.38 -0.2
706,578 - GFF969 0.38 -0.2
706,578 - GFF969 0.38 -0.1
706,578 - GFF969 0.38 -0.1
706,578 - GFF969 0.38 -0.2
706,666 - GFF969 0.49 -0.2
706,784 + GFF969 0.64 -0.2
706,784 + GFF969 0.64 +0.3
706,785 - GFF969 0.64 +0.4
707,066 + -0.4
707,067 - -0.3

Or see this region's nucleotide sequence