Experiment: Ying_sugar7 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF949 and GFF950 overlap by 1 nucleotides GFF950 and GFF951 overlap by 1 nucleotides GFF951 and GFF952 overlap by 4 nucleotides GFF952 and GFF953 are separated by 10 nucleotides
GFF949 - Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1), at 683,723 to 684,769
GFF949
GFF950 - High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1), at 684,769 to 685,641
GFF950
GFF951 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 685,641 to 687,509
GFF951
GFF952 - Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1), at 687,506 to 688,288
GFF952
GFF953 - Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1), at 688,299 to 689,090
GFF953
Position (kb) 685
686
687
688 Strain fitness (log2 ratio) -1
0
1 at 684.641 kb on + strand, within GFF949 at 684.642 kb on + strand, within GFF949 at 684.642 kb on + strand, within GFF949 at 684.806 kb on + strand at 684.806 kb on + strand at 684.806 kb on + strand at 684.806 kb on + strand at 684.819 kb on + strand at 684.875 kb on + strand, within GFF950 at 684.875 kb on + strand, within GFF950 at 684.876 kb on - strand, within GFF950 at 684.876 kb on - strand, within GFF950 at 685.011 kb on - strand, within GFF950 at 685.189 kb on + strand, within GFF950 at 685.215 kb on - strand, within GFF950 at 685.229 kb on + strand, within GFF950 at 685.499 kb on + strand, within GFF950 at 685.499 kb on + strand, within GFF950 at 685.499 kb on + strand, within GFF950 at 685.590 kb on - strand at 685.634 kb on + strand at 685.634 kb on + strand at 685.879 kb on + strand, within GFF951 at 685.879 kb on + strand, within GFF951 at 685.880 kb on - strand, within GFF951 at 685.949 kb on - strand, within GFF951 at 685.987 kb on + strand, within GFF951 at 685.987 kb on + strand, within GFF951 at 685.987 kb on + strand, within GFF951 at 685.988 kb on - strand, within GFF951 at 685.988 kb on - strand, within GFF951 at 686.173 kb on + strand, within GFF951 at 686.323 kb on + strand, within GFF951 at 686.368 kb on - strand, within GFF951 at 686.791 kb on + strand, within GFF951 at 686.792 kb on - strand, within GFF951 at 686.792 kb on - strand, within GFF951 at 686.899 kb on + strand, within GFF951 at 686.994 kb on + strand, within GFF951 at 687.037 kb on + strand, within GFF951 at 687.184 kb on + strand, within GFF951 at 687.184 kb on + strand, within GFF951 at 687.184 kb on + strand, within GFF951 at 687.364 kb on + strand at 687.397 kb on + strand at 687.398 kb on - strand at 687.538 kb on - strand at 687.538 kb on - strand at 687.822 kb on + strand, within GFF952 at 687.823 kb on - strand, within GFF952 at 688.188 kb on + strand, within GFF952 at 688.272 kb on - strand at 688.272 kb on - strand at 688.327 kb on + strand at 688.327 kb on + strand at 688.328 kb on - strand at 688.328 kb on - strand at 688.328 kb on - strand at 688.381 kb on + strand, within GFF953 at 688.381 kb on + strand, within GFF953 at 688.382 kb on - strand, within GFF953 at 688.459 kb on + strand, within GFF953 at 688.459 kb on + strand, within GFF953 at 688.459 kb on + strand, within GFF953 at 688.459 kb on + strand, within GFF953 at 688.460 kb on - strand, within GFF953 at 688.460 kb on - strand, within GFF953 at 688.466 kb on - strand, within GFF953
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 3 remove 684,641 + GFF949 0.88 -0.7 684,642 + GFF949 0.88 +0.0 684,642 + GFF949 0.88 +0.1 684,806 + -0.1 684,806 + +0.4 684,806 + +0.0 684,806 + +0.4 684,819 + +0.4 684,875 + GFF950 0.12 -0.5 684,875 + GFF950 0.12 -0.1 684,876 - GFF950 0.12 +0.1 684,876 - GFF950 0.12 +0.2 685,011 - GFF950 0.28 +0.7 685,189 + GFF950 0.48 +0.2 685,215 - GFF950 0.51 -0.3 685,229 + GFF950 0.53 +0.2 685,499 + GFF950 0.84 +0.1 685,499 + GFF950 0.84 -0.6 685,499 + GFF950 0.84 +0.3 685,590 - -0.4 685,634 + +0.1 685,634 + -0.3 685,879 + GFF951 0.13 +0.8 685,879 + GFF951 0.13 +0.2 685,880 - GFF951 0.13 -0.1 685,949 - GFF951 0.16 -0.4 685,987 + GFF951 0.19 -1.2 685,987 + GFF951 0.19 -0.2 685,987 + GFF951 0.19 +0.2 685,988 - GFF951 0.19 -0.4 685,988 - GFF951 0.19 -0.1 686,173 + GFF951 0.28 -0.2 686,323 + GFF951 0.36 -0.8 686,368 - GFF951 0.39 -0.8 686,791 + GFF951 0.62 +0.4 686,792 - GFF951 0.62 +0.6 686,792 - GFF951 0.62 -0.4 686,899 + GFF951 0.67 -0.7 686,994 + GFF951 0.72 -0.5 687,037 + GFF951 0.75 -0.0 687,184 + GFF951 0.83 -1.7 687,184 + GFF951 0.83 -0.2 687,184 + GFF951 0.83 +0.6 687,364 + -0.2 687,397 + -1.0 687,398 - -0.0 687,538 - -0.2 687,538 - +0.4 687,822 + GFF952 0.40 +0.3 687,823 - GFF952 0.40 +0.4 688,188 + GFF952 0.87 +0.3 688,272 - -0.7 688,272 - +0.3 688,327 + +0.4 688,327 + -0.5 688,328 - +0.6 688,328 - -0.5 688,328 - -0.1 688,381 + GFF953 0.10 +0.1 688,381 + GFF953 0.10 +1.3 688,382 - GFF953 0.10 +0.0 688,459 + GFF953 0.20 +0.3 688,459 + GFF953 0.20 -0.7 688,459 + GFF953 0.20 -0.2 688,459 + GFF953 0.20 -0.2 688,460 - GFF953 0.20 +0.1 688,460 - GFF953 0.20 -0.5 688,466 - GFF953 0.21 +0.8
Or see this region's nucleotide sequence