Experiment: Ying_sugar7 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF785 and GFF786 are separated by 101 nucleotides GFF786 and GFF787 are separated by 13 nucleotides GFF787 and GFF788 are separated by 50 nucleotides
GFF785 - Transcriptional regulator ligR, LysR family, at 480,869 to 481,795
GFF785
GFF786 - probable polyketide cyclase, at 481,897 to 482,895
GFF786
GFF787 - hypothetical protein AF1210, at 482,909 to 483,844
GFF787
GFF788 - Tricarboxylate transport protein TctC, at 483,895 to 484,872
GFF788
Position (kb) 481
482
483 Strain fitness (log2 ratio) -1
0
1 at 481.088 kb on + strand, within GFF785 at 481.088 kb on + strand, within GFF785 at 481.088 kb on + strand, within GFF785 at 481.088 kb on + strand, within GFF785 at 481.089 kb on - strand, within GFF785 at 481.089 kb on - strand, within GFF785 at 481.089 kb on - strand, within GFF785 at 481.206 kb on - strand, within GFF785 at 481.217 kb on + strand, within GFF785 at 481.218 kb on - strand, within GFF785 at 481.265 kb on + strand, within GFF785 at 481.265 kb on + strand, within GFF785 at 481.265 kb on + strand, within GFF785 at 481.682 kb on + strand, within GFF785 at 481.683 kb on - strand, within GFF785 at 481.806 kb on + strand at 481.806 kb on + strand at 481.807 kb on - strand at 481.807 kb on - strand at 481.807 kb on - strand at 481.839 kb on + strand at 482.233 kb on + strand, within GFF786 at 482.815 kb on + strand at 482.816 kb on - strand at 482.894 kb on - strand at 482.894 kb on - strand at 483.377 kb on + strand, within GFF787 at 483.377 kb on + strand, within GFF787 at 483.377 kb on + strand, within GFF787 at 483.378 kb on - strand, within GFF787 at 483.378 kb on - strand, within GFF787 at 483.378 kb on - strand, within GFF787 at 483.378 kb on - strand, within GFF787 at 483.446 kb on + strand, within GFF787 at 483.593 kb on + strand, within GFF787 at 483.594 kb on - strand, within GFF787 at 483.594 kb on - strand, within GFF787 at 483.596 kb on - strand, within GFF787 at 483.597 kb on - strand, within GFF787
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 3 remove 481,088 + GFF785 0.24 +0.2 481,088 + GFF785 0.24 +1.3 481,088 + GFF785 0.24 -0.3 481,088 + GFF785 0.24 +0.7 481,089 - GFF785 0.24 +1.4 481,089 - GFF785 0.24 +1.6 481,089 - GFF785 0.24 +0.3 481,206 - GFF785 0.36 +0.8 481,217 + GFF785 0.38 -0.3 481,218 - GFF785 0.38 +1.5 481,265 + GFF785 0.43 +0.4 481,265 + GFF785 0.43 +0.1 481,265 + GFF785 0.43 -0.7 481,682 + GFF785 0.88 -1.4 481,683 - GFF785 0.88 +0.0 481,806 + +1.0 481,806 + +0.1 481,807 - +0.3 481,807 - -0.3 481,807 - +0.2 481,839 + +0.3 482,233 + GFF786 0.34 +0.2 482,815 + +0.2 482,816 - -0.2 482,894 - +0.6 482,894 - -0.9 483,377 + GFF787 0.50 -0.4 483,377 + GFF787 0.50 -0.3 483,377 + GFF787 0.50 -0.7 483,378 - GFF787 0.50 -0.6 483,378 - GFF787 0.50 -0.2 483,378 - GFF787 0.50 +0.3 483,378 - GFF787 0.50 -0.7 483,446 + GFF787 0.57 -0.9 483,593 + GFF787 0.73 -0.0 483,594 - GFF787 0.73 +0.0 483,594 - GFF787 0.73 -1.4 483,596 - GFF787 0.73 -0.2 483,597 - GFF787 0.74 +1.2
Or see this region's nucleotide sequence