Experiment: Ying_sugar7 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF702 and GFF703 are separated by 152 nucleotides GFF703 and GFF704 overlap by 4 nucleotides
GFF702 - Outer membrane stress sensor protease DegS, at 380,951 to 382,429
GFF702
GFF703 - TRAP-type C4-dicarboxylate transport system, small permease component, at 382,582 to 383,130
GFF703
GFF704 - TRAP-type C4-dicarboxylate transport system, large permease component, at 383,127 to 384,425
GFF704
Position (kb) 382
383
384 Strain fitness (log2 ratio) -1
0
1
2 at 381.731 kb on + strand, within GFF702 at 381.731 kb on + strand, within GFF702 at 381.731 kb on + strand, within GFF702 at 381.731 kb on + strand, within GFF702 at 381.731 kb on + strand, within GFF702 at 381.731 kb on + strand, within GFF702 at 381.732 kb on - strand, within GFF702 at 381.732 kb on - strand, within GFF702 at 381.732 kb on - strand, within GFF702 at 382.522 kb on + strand at 382.593 kb on + strand at 382.593 kb on + strand at 382.593 kb on + strand at 382.594 kb on - strand at 382.990 kb on + strand, within GFF703 at 382.990 kb on + strand, within GFF703 at 382.990 kb on + strand, within GFF703 at 382.990 kb on + strand, within GFF703 at 382.990 kb on + strand, within GFF703 at 382.991 kb on - strand, within GFF703 at 382.991 kb on - strand, within GFF703 at 382.991 kb on - strand, within GFF703 at 382.991 kb on - strand, within GFF703 at 382.991 kb on - strand, within GFF703 at 382.991 kb on - strand, within GFF703 at 382.996 kb on + strand, within GFF703 at 382.997 kb on - strand, within GFF703 at 383.038 kb on + strand, within GFF703 at 383.039 kb on - strand, within GFF703 at 383.281 kb on - strand, within GFF704 at 383.281 kb on - strand, within GFF704 at 383.298 kb on + strand, within GFF704 at 383.299 kb on - strand, within GFF704 at 383.299 kb on - strand, within GFF704 at 383.613 kb on + strand, within GFF704 at 383.614 kb on - strand, within GFF704 at 383.614 kb on - strand, within GFF704 at 383.614 kb on - strand, within GFF704 at 383.614 kb on - strand, within GFF704 at 383.614 kb on - strand, within GFF704 at 383.883 kb on + strand, within GFF704 at 383.883 kb on + strand, within GFF704 at 383.884 kb on - strand, within GFF704
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 3 remove 381,731 + GFF702 0.53 +0.7 381,731 + GFF702 0.53 +0.3 381,731 + GFF702 0.53 -0.0 381,731 + GFF702 0.53 +0.4 381,731 + GFF702 0.53 +0.4 381,731 + GFF702 0.53 -0.6 381,732 - GFF702 0.53 +0.5 381,732 - GFF702 0.53 +0.1 381,732 - GFF702 0.53 +0.6 382,522 + -0.3 382,593 + -0.9 382,593 + +0.2 382,593 + +0.3 382,594 - +0.2 382,990 + GFF703 0.74 -0.2 382,990 + GFF703 0.74 -0.3 382,990 + GFF703 0.74 -1.3 382,990 + GFF703 0.74 +0.0 382,990 + GFF703 0.74 +0.1 382,991 - GFF703 0.74 +1.9 382,991 - GFF703 0.74 +0.3 382,991 - GFF703 0.74 -0.1 382,991 - GFF703 0.74 +0.0 382,991 - GFF703 0.74 -0.7 382,991 - GFF703 0.74 +0.9 382,996 + GFF703 0.75 -0.2 382,997 - GFF703 0.76 -0.4 383,038 + GFF703 0.83 +1.1 383,039 - GFF703 0.83 +0.9 383,281 - GFF704 0.12 +0.1 383,281 - GFF704 0.12 -1.4 383,298 + GFF704 0.13 +0.1 383,299 - GFF704 0.13 -0.0 383,299 - GFF704 0.13 +1.3 383,613 + GFF704 0.37 +0.8 383,614 - GFF704 0.37 -0.1 383,614 - GFF704 0.37 +0.1 383,614 - GFF704 0.37 +0.9 383,614 - GFF704 0.37 +0.0 383,614 - GFF704 0.37 -0.0 383,883 + GFF704 0.58 -0.4 383,883 + GFF704 0.58 +0.5 383,884 - GFF704 0.58 -0.4
Or see this region's nucleotide sequence