Experiment: Ying_sugar7 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF701 and GFF702 are separated by 56 nucleotides GFF702 and GFF703 are separated by 152 nucleotides GFF703 and GFF704 overlap by 4 nucleotides
GFF701 - Sensory histidine kinase QseC, at 379,557 to 380,894
GFF701
GFF702 - Outer membrane stress sensor protease DegS, at 380,951 to 382,429
GFF702
GFF703 - TRAP-type C4-dicarboxylate transport system, small permease component, at 382,582 to 383,130
GFF703
GFF704 - TRAP-type C4-dicarboxylate transport system, large permease component, at 383,127 to 384,425
GFF704
Position (kb) 380
381
382
383 Strain fitness (log2 ratio) -1
0
1
2 at 380.613 kb on + strand, within GFF701 at 380.613 kb on + strand, within GFF701 at 380.614 kb on - strand, within GFF701 at 380.614 kb on - strand, within GFF701 at 380.614 kb on - strand, within GFF701 at 380.739 kb on + strand, within GFF701 at 380.740 kb on - strand, within GFF701 at 380.881 kb on + strand at 380.881 kb on + strand at 380.881 kb on + strand at 380.881 kb on + strand at 380.908 kb on + strand at 381.731 kb on + strand, within GFF702 at 381.731 kb on + strand, within GFF702 at 381.731 kb on + strand, within GFF702 at 381.731 kb on + strand, within GFF702 at 381.731 kb on + strand, within GFF702 at 381.731 kb on + strand, within GFF702 at 381.732 kb on - strand, within GFF702 at 381.732 kb on - strand, within GFF702 at 381.732 kb on - strand, within GFF702 at 382.522 kb on + strand at 382.593 kb on + strand at 382.593 kb on + strand at 382.593 kb on + strand at 382.594 kb on - strand at 382.990 kb on + strand, within GFF703 at 382.990 kb on + strand, within GFF703 at 382.990 kb on + strand, within GFF703 at 382.990 kb on + strand, within GFF703 at 382.990 kb on + strand, within GFF703 at 382.991 kb on - strand, within GFF703 at 382.991 kb on - strand, within GFF703 at 382.991 kb on - strand, within GFF703 at 382.991 kb on - strand, within GFF703 at 382.991 kb on - strand, within GFF703 at 382.991 kb on - strand, within GFF703 at 382.996 kb on + strand, within GFF703 at 382.997 kb on - strand, within GFF703 at 383.038 kb on + strand, within GFF703 at 383.039 kb on - strand, within GFF703 at 383.281 kb on - strand, within GFF704 at 383.281 kb on - strand, within GFF704 at 383.298 kb on + strand, within GFF704 at 383.299 kb on - strand, within GFF704 at 383.299 kb on - strand, within GFF704
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 3 remove 380,613 + GFF701 0.79 -0.5 380,613 + GFF701 0.79 -0.2 380,614 - GFF701 0.79 -0.3 380,614 - GFF701 0.79 -1.2 380,614 - GFF701 0.79 -0.8 380,739 + GFF701 0.88 +0.3 380,740 - GFF701 0.88 -0.7 380,881 + +1.1 380,881 + +0.0 380,881 + -0.6 380,881 + +0.1 380,908 + -0.0 381,731 + GFF702 0.53 +0.7 381,731 + GFF702 0.53 +0.3 381,731 + GFF702 0.53 -0.0 381,731 + GFF702 0.53 +0.4 381,731 + GFF702 0.53 +0.4 381,731 + GFF702 0.53 -0.6 381,732 - GFF702 0.53 +0.5 381,732 - GFF702 0.53 +0.1 381,732 - GFF702 0.53 +0.6 382,522 + -0.3 382,593 + -0.9 382,593 + +0.2 382,593 + +0.3 382,594 - +0.2 382,990 + GFF703 0.74 -0.2 382,990 + GFF703 0.74 -0.3 382,990 + GFF703 0.74 -1.3 382,990 + GFF703 0.74 +0.0 382,990 + GFF703 0.74 +0.1 382,991 - GFF703 0.74 +1.9 382,991 - GFF703 0.74 +0.3 382,991 - GFF703 0.74 -0.1 382,991 - GFF703 0.74 +0.0 382,991 - GFF703 0.74 -0.7 382,991 - GFF703 0.74 +0.9 382,996 + GFF703 0.75 -0.2 382,997 - GFF703 0.76 -0.4 383,038 + GFF703 0.83 +1.1 383,039 - GFF703 0.83 +0.9 383,281 - GFF704 0.12 +0.1 383,281 - GFF704 0.12 -1.4 383,298 + GFF704 0.13 +0.1 383,299 - GFF704 0.13 -0.0 383,299 - GFF704 0.13 +1.3
Or see this region's nucleotide sequence