Experiment: Ying_sugar7 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF698 and GFF699 are separated by 10 nucleotides GFF699 and GFF700 are separated by 89 nucleotides GFF700 and GFF701 overlap by 4 nucleotides
GFF698 - Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB, at 377,299 to 378,204
GFF698
GFF699 - Cytochrome oxidase biogenesis protein Sco1/SenC/PrrC, putative copper metallochaperone, at 378,215 to 378,811
GFF699
GFF700 - Two-component system response regulator QseB, at 378,901 to 379,560
GFF700
GFF701 - Sensory histidine kinase QseC, at 379,557 to 380,894
GFF701
Position (kb) 378
379
380 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 377.912 kb on - strand, within GFF698 at 377.984 kb on - strand, within GFF698 at 378.088 kb on + strand, within GFF698 at 378.196 kb on + strand at 378.196 kb on + strand at 378.196 kb on + strand at 378.196 kb on + strand at 378.196 kb on + strand at 378.197 kb on - strand at 378.330 kb on - strand, within GFF699 at 378.564 kb on - strand, within GFF699 at 378.638 kb on + strand, within GFF699 at 378.647 kb on + strand, within GFF699 at 378.648 kb on - strand, within GFF699 at 378.648 kb on - strand, within GFF699 at 378.648 kb on - strand, within GFF699 at 378.710 kb on + strand, within GFF699 at 378.711 kb on - strand, within GFF699 at 378.716 kb on + strand, within GFF699 at 378.716 kb on + strand, within GFF699 at 378.743 kb on + strand, within GFF699 at 378.820 kb on + strand at 378.820 kb on + strand at 378.973 kb on + strand, within GFF700 at 378.973 kb on + strand, within GFF700 at 378.973 kb on + strand, within GFF700 at 378.974 kb on - strand, within GFF700 at 379.033 kb on + strand, within GFF700 at 379.033 kb on + strand, within GFF700 at 379.033 kb on + strand, within GFF700 at 379.034 kb on - strand, within GFF700 at 379.192 kb on + strand, within GFF700 at 379.192 kb on + strand, within GFF700 at 379.192 kb on + strand, within GFF700 at 379.192 kb on + strand, within GFF700 at 379.192 kb on + strand, within GFF700 at 379.193 kb on - strand, within GFF700 at 379.193 kb on - strand, within GFF700 at 379.193 kb on - strand, within GFF700 at 379.193 kb on - strand, within GFF700 at 379.193 kb on - strand, within GFF700 at 379.193 kb on - strand, within GFF700 at 379.193 kb on - strand, within GFF700 at 379.207 kb on + strand, within GFF700 at 379.207 kb on + strand, within GFF700 at 379.208 kb on - strand, within GFF700 at 379.208 kb on - strand, within GFF700 at 379.435 kb on + strand, within GFF700 at 379.436 kb on - strand, within GFF700 at 379.436 kb on - strand, within GFF700 at 379.477 kb on + strand, within GFF700 at 379.477 kb on + strand, within GFF700 at 379.477 kb on + strand, within GFF700 at 379.477 kb on + strand, within GFF700 at 379.477 kb on + strand, within GFF700 at 379.477 kb on + strand, within GFF700 at 379.478 kb on - strand, within GFF700 at 379.478 kb on - strand, within GFF700 at 379.478 kb on - strand, within GFF700 at 379.478 kb on - strand, within GFF700 at 379.478 kb on - strand, within GFF700 at 379.478 kb on - strand, within GFF700 at 379.480 kb on - strand, within GFF700 at 379.480 kb on - strand, within GFF700 at 379.540 kb on + strand at 379.541 kb on - strand at 379.541 kb on - strand at 379.541 kb on - strand at 379.541 kb on - strand at 379.650 kb on + strand at 379.650 kb on + strand at 379.650 kb on + strand at 379.651 kb on - strand at 379.690 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 3 remove 377,912 - GFF698 0.68 -4.0 377,984 - GFF698 0.76 -2.6 378,088 + GFF698 0.87 -2.3 378,196 + -0.1 378,196 + -1.1 378,196 + -0.0 378,196 + -0.1 378,196 + -0.3 378,197 - -0.7 378,330 - GFF699 0.19 +0.1 378,564 - GFF699 0.58 -0.3 378,638 + GFF699 0.71 -0.5 378,647 + GFF699 0.72 -0.6 378,648 - GFF699 0.73 +0.3 378,648 - GFF699 0.73 +1.5 378,648 - GFF699 0.73 +1.7 378,710 + GFF699 0.83 +0.9 378,711 - GFF699 0.83 -0.1 378,716 + GFF699 0.84 +0.2 378,716 + GFF699 0.84 -0.1 378,743 + GFF699 0.88 +0.5 378,820 + +0.4 378,820 + +0.4 378,973 + GFF700 0.11 -0.4 378,973 + GFF700 0.11 +0.9 378,973 + GFF700 0.11 +1.0 378,974 - GFF700 0.11 +0.6 379,033 + GFF700 0.20 -0.2 379,033 + GFF700 0.20 -1.0 379,033 + GFF700 0.20 +0.0 379,034 - GFF700 0.20 -0.5 379,192 + GFF700 0.44 -0.0 379,192 + GFF700 0.44 +0.0 379,192 + GFF700 0.44 +0.3 379,192 + GFF700 0.44 +0.4 379,192 + GFF700 0.44 +0.4 379,193 - GFF700 0.44 +0.4 379,193 - GFF700 0.44 +0.2 379,193 - GFF700 0.44 -0.4 379,193 - GFF700 0.44 -0.6 379,193 - GFF700 0.44 +1.0 379,193 - GFF700 0.44 -0.6 379,193 - GFF700 0.44 +0.1 379,207 + GFF700 0.46 -0.6 379,207 + GFF700 0.46 +0.1 379,208 - GFF700 0.47 +0.6 379,208 - GFF700 0.47 +0.3 379,435 + GFF700 0.81 -0.9 379,436 - GFF700 0.81 -0.7 379,436 - GFF700 0.81 -1.1 379,477 + GFF700 0.87 +0.1 379,477 + GFF700 0.87 -0.3 379,477 + GFF700 0.87 +0.3 379,477 + GFF700 0.87 +0.4 379,477 + GFF700 0.87 +0.1 379,477 + GFF700 0.87 -1.4 379,478 - GFF700 0.87 -0.8 379,478 - GFF700 0.87 -1.1 379,478 - GFF700 0.87 -0.5 379,478 - GFF700 0.87 -0.5 379,478 - GFF700 0.87 +0.7 379,478 - GFF700 0.87 -0.9 379,480 - GFF700 0.88 +0.1 379,480 - GFF700 0.88 +0.2 379,540 + +0.1 379,541 - -0.7 379,541 - -0.4 379,541 - +0.6 379,541 - +0.9 379,650 + -1.4 379,650 + -0.9 379,650 + -3.3 379,651 - -1.0 379,690 - -1.7
Or see this region's nucleotide sequence