Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF664

Experiment: Ying_sugar7 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF663 and GFF664 are separated by 52 nucleotidesGFF664 and GFF665 are separated by 9 nucleotidesGFF665 and GFF666 are separated by 80 nucleotides GFF663 - Ferric iron ABC transporter, permease protein, at 345,508 to 347,115 GFF663 GFF664 - FIG00932412: hypothetical protein, at 347,168 to 347,611 GFF664 GFF665 - PhnB protein; putative DNA binding 3-demethylubiquinone-9 3-methyltransferase domain protein, at 347,621 to 348,052 GFF665 GFF666 - Fused spore maturation proteins A and B, at 348,133 to 349,425 GFF666 Position (kb) 347 348Strain fitness (log2 ratio) -3 -2 -1 0 1at 346.180 kb on + strand, within GFF663at 346.180 kb on + strand, within GFF663at 346.180 kb on + strand, within GFF663at 346.180 kb on + strand, within GFF663at 346.181 kb on - strand, within GFF663at 346.181 kb on - strand, within GFF663at 346.624 kb on + strand, within GFF663at 346.624 kb on + strand, within GFF663at 346.624 kb on + strand, within GFF663at 346.711 kb on + strand, within GFF663at 346.712 kb on - strand, within GFF663at 346.712 kb on - strand, within GFF663at 346.712 kb on - strand, within GFF663at 347.002 kb on + strandat 347.114 kb on - strandat 347.158 kb on + strandat 347.158 kb on + strandat 347.159 kb on - strandat 347.298 kb on - strand, within GFF664at 347.324 kb on + strand, within GFF664at 347.324 kb on + strand, within GFF664at 347.324 kb on + strand, within GFF664at 347.325 kb on - strand, within GFF664at 347.333 kb on + strand, within GFF664at 347.375 kb on + strand, within GFF664at 347.376 kb on - strand, within GFF664at 347.376 kb on - strand, within GFF664at 347.376 kb on - strand, within GFF664at 347.376 kb on - strand, within GFF664at 347.376 kb on - strand, within GFF664at 347.540 kb on + strand, within GFF664at 347.540 kb on + strand, within GFF664at 347.540 kb on + strand, within GFF664at 347.540 kb on + strand, within GFF664at 347.540 kb on + strand, within GFF664at 347.540 kb on + strand, within GFF664at 347.541 kb on - strand, within GFF664at 347.541 kb on - strand, within GFF664at 347.883 kb on + strand, within GFF665at 347.883 kb on + strand, within GFF665at 347.883 kb on + strand, within GFF665at 347.883 kb on + strand, within GFF665at 347.883 kb on + strand, within GFF665at 347.883 kb on + strand, within GFF665at 347.883 kb on + strand, within GFF665at 347.884 kb on - strand, within GFF665at 347.946 kb on + strand, within GFF665at 347.946 kb on + strand, within GFF665at 347.947 kb on - strand, within GFF665at 347.947 kb on - strand, within GFF665at 347.988 kb on + strand, within GFF665at 347.989 kb on - strand, within GFF665at 348.021 kb on + strandat 348.021 kb on + strandat 348.021 kb on + strandat 348.021 kb on + strandat 348.022 kb on - strandat 348.030 kb on + strandat 348.031 kb on - strandat 348.031 kb on - strandat 348.031 kb on - strandat 348.031 kb on - strandat 348.158 kb on + strandat 348.158 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 3
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346,180 + GFF663 0.42 -0.2
346,180 + GFF663 0.42 -0.4
346,180 + GFF663 0.42 -2.2
346,180 + GFF663 0.42 -0.0
346,181 - GFF663 0.42 +0.2
346,181 - GFF663 0.42 -0.7
346,624 + GFF663 0.69 -0.4
346,624 + GFF663 0.69 -0.2
346,624 + GFF663 0.69 -0.4
346,711 + GFF663 0.75 +0.5
346,712 - GFF663 0.75 +0.2
346,712 - GFF663 0.75 -0.9
346,712 - GFF663 0.75 +0.1
347,002 + -0.5
347,114 - -0.1
347,158 + +0.7
347,158 + -0.4
347,159 - +0.0
347,298 - GFF664 0.29 +0.1
347,324 + GFF664 0.35 -0.1
347,324 + GFF664 0.35 +0.7
347,324 + GFF664 0.35 +0.8
347,325 - GFF664 0.35 -0.6
347,333 + GFF664 0.37 -1.7
347,375 + GFF664 0.47 -0.2
347,376 - GFF664 0.47 -0.5
347,376 - GFF664 0.47 -0.0
347,376 - GFF664 0.47 -0.7
347,376 - GFF664 0.47 -0.3
347,376 - GFF664 0.47 -0.3
347,540 + GFF664 0.84 +0.1
347,540 + GFF664 0.84 -0.9
347,540 + GFF664 0.84 -0.1
347,540 + GFF664 0.84 +1.1
347,540 + GFF664 0.84 +0.2
347,540 + GFF664 0.84 +0.1
347,541 - GFF664 0.84 -0.1
347,541 - GFF664 0.84 -0.1
347,883 + GFF665 0.61 +0.2
347,883 + GFF665 0.61 -0.4
347,883 + GFF665 0.61 +0.5
347,883 + GFF665 0.61 +0.1
347,883 + GFF665 0.61 +0.2
347,883 + GFF665 0.61 -0.1
347,883 + GFF665 0.61 -0.4
347,884 - GFF665 0.61 +0.3
347,946 + GFF665 0.75 +0.3
347,946 + GFF665 0.75 +0.1
347,947 - GFF665 0.75 -0.3
347,947 - GFF665 0.75 +0.7
347,988 + GFF665 0.85 +0.3
347,989 - GFF665 0.85 -0.2
348,021 + +0.1
348,021 + -2.9
348,021 + -1.7
348,021 + +0.5
348,022 - -0.5
348,030 + +1.2
348,031 - +0.8
348,031 - +0.5
348,031 - -0.1
348,031 - +0.4
348,158 + -0.3
348,158 + -0.1

Or see this region's nucleotide sequence