Experiment: Ying_sugar7 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF628 and GFF629 are separated by 127 nucleotides GFF629 and GFF630 are separated by 177 nucleotides
GFF628 - Tricarboxylate transport protein TctC, at 304,482 to 305,462
GFF628
GFF629 - Transcriptional regulator, LysR family, at 305,590 to 306,465
GFF629
GFF630 - GTP-binding and nucleic acid-binding protein YchF, at 306,643 to 307,734
GFF630
Position (kb) 305
306
307 Strain fitness (log2 ratio) -1
0
1 at 304.741 kb on + strand, within GFF628 at 304.815 kb on + strand, within GFF628 at 304.903 kb on + strand, within GFF628 at 304.904 kb on - strand, within GFF628 at 304.904 kb on - strand, within GFF628 at 304.904 kb on - strand, within GFF628 at 304.996 kb on + strand, within GFF628 at 304.997 kb on - strand, within GFF628 at 304.997 kb on - strand, within GFF628 at 304.997 kb on - strand, within GFF628 at 305.129 kb on - strand, within GFF628 at 305.129 kb on - strand, within GFF628 at 305.147 kb on - strand, within GFF628 at 305.197 kb on + strand, within GFF628 at 305.197 kb on + strand, within GFF628 at 305.299 kb on + strand, within GFF628 at 305.499 kb on - strand at 305.556 kb on - strand at 305.953 kb on + strand, within GFF629 at 306.052 kb on + strand, within GFF629 at 306.053 kb on - strand, within GFF629 at 306.053 kb on - strand, within GFF629 at 306.145 kb on + strand, within GFF629 at 306.145 kb on + strand, within GFF629 at 306.157 kb on + strand, within GFF629 at 306.158 kb on - strand, within GFF629 at 306.158 kb on - strand, within GFF629 at 306.370 kb on + strand, within GFF629 at 306.373 kb on + strand, within GFF629 at 306.373 kb on + strand, within GFF629 at 306.373 kb on + strand, within GFF629 at 306.373 kb on + strand, within GFF629 at 306.373 kb on + strand, within GFF629 at 306.374 kb on - strand, within GFF629 at 306.374 kb on - strand, within GFF629 at 306.374 kb on - strand, within GFF629 at 306.374 kb on - strand, within GFF629 at 306.374 kb on - strand, within GFF629 at 306.374 kb on - strand, within GFF629 at 306.376 kb on - strand, within GFF629 at 306.376 kb on - strand, within GFF629 at 306.467 kb on + strand at 306.467 kb on + strand at 306.467 kb on + strand at 306.468 kb on - strand at 306.630 kb on + strand at 306.630 kb on - strand at 306.630 kb on - strand at 306.737 kb on - strand at 307.463 kb on - strand, within GFF630
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 3 remove 304,741 + GFF628 0.26 +0.0 304,815 + GFF628 0.34 +1.0 304,903 + GFF628 0.43 +0.3 304,904 - GFF628 0.43 +0.3 304,904 - GFF628 0.43 -0.3 304,904 - GFF628 0.43 +0.7 304,996 + GFF628 0.52 +0.9 304,997 - GFF628 0.52 +1.4 304,997 - GFF628 0.52 +0.3 304,997 - GFF628 0.52 -1.1 305,129 - GFF628 0.66 +0.2 305,129 - GFF628 0.66 +0.0 305,147 - GFF628 0.68 +0.9 305,197 + GFF628 0.73 +1.3 305,197 + GFF628 0.73 -0.7 305,299 + GFF628 0.83 +0.1 305,499 - +0.4 305,556 - -0.9 305,953 + GFF629 0.41 -0.0 306,052 + GFF629 0.53 +1.3 306,053 - GFF629 0.53 -0.2 306,053 - GFF629 0.53 -0.2 306,145 + GFF629 0.63 +0.0 306,145 + GFF629 0.63 -0.1 306,157 + GFF629 0.65 +0.5 306,158 - GFF629 0.65 +0.1 306,158 - GFF629 0.65 +0.9 306,370 + GFF629 0.89 +0.3 306,373 + GFF629 0.89 +1.3 306,373 + GFF629 0.89 -0.3 306,373 + GFF629 0.89 -0.7 306,373 + GFF629 0.89 +0.3 306,373 + GFF629 0.89 +0.6 306,374 - GFF629 0.89 +1.1 306,374 - GFF629 0.89 +0.2 306,374 - GFF629 0.89 -0.1 306,374 - GFF629 0.89 +0.3 306,374 - GFF629 0.89 +0.2 306,374 - GFF629 0.89 -0.1 306,376 - GFF629 0.90 +0.6 306,376 - GFF629 0.90 -0.1 306,467 + +0.2 306,467 + +0.6 306,467 + +0.1 306,468 - -1.2 306,630 + -0.4 306,630 - +0.1 306,630 - -1.2 306,737 - -1.1 307,463 - GFF630 0.75 -0.4
Or see this region's nucleotide sequence