Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5656

Experiment: Ying_sugar7 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep B; time point 3
2,678,160	+				-0.1
2,678,161	-				-0.1
2,678,297	+		GFF5655	0.10	+1.1
2,678,297	+		GFF5655	0.10	-0.2
2,678,298	-		GFF5655	0.10	+0.3
2,678,298	-		GFF5655	0.10	-0.7
2,678,298	-		GFF5655	0.10	-0.6
2,678,793	-		GFF5655	0.63	-0.8
2,678,987	+		GFF5655	0.83	+0.3
2,678,988	-		GFF5655	0.83	+0.8
2,678,988	-		GFF5655	0.83	+0.3
2,679,110	-				-0.3
2,679,148	+				+0.1
2,679,148	+				+0.1
2,679,148	+				+0.3
2,679,149	-				-0.1
2,679,571	+		GFF5656	0.76	+2.1
2,679,571	+		GFF5656	0.76	+1.2
2,679,631	+		GFF5656	0.86	-0.0
2,679,632	-		GFF5656	0.86	+0.5
2,679,632	-		GFF5656	0.86	-1.0
2,679,745	+				+0.8
2,680,021	+		GFF5657	0.21	-0.2
2,680,579	+		GFF5657	0.67	+0.5