Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5555

Experiment: Ying_sugar7 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep B; time point 3
2,566,147	+				-0.4
2,566,604	-		GFF5555	0.52	+0.8
2,566,604	-		GFF5555	0.52	+1.3
2,566,730	-		GFF5555	0.65	+0.3
2,566,741	+		GFF5555	0.66	-0.1
2,566,742	-		GFF5555	0.66	+0.2
2,566,816	+		GFF5555	0.74	+0.8
2,566,817	-		GFF5555	0.74	+0.6
2,566,912	+		GFF5555	0.84	+0.2
2,567,072	+				-1.2
2,567,072	+				-1.4
2,567,073	-				-0.4
2,567,073	-				+0.5
2,567,114	+				+0.1
2,567,174	+		GFF5556	0.15	-1.5
2,567,420	+		GFF5556	0.67	-1.7
2,567,420	+		GFF5556	0.67	-1.5
2,567,420	+		GFF5556	0.67	-1.2
2,567,574	-				+0.1
2,567,988	+		GFF5558	0.17	-0.3
2,567,989	-		GFF5558	0.17	-0.2
2,568,021	+		GFF5558	0.20	+0.6
2,568,021	+		GFF5558	0.20	+0.2
2,568,021	+		GFF5558	0.20	-0.4
2,568,021	+		GFF5558	0.20	+0.3
2,568,021	+		GFF5558	0.20	+0.0
2,568,021	+		GFF5558	0.20	-0.3
2,568,021	+		GFF5558	0.20	-0.2
2,568,022	-		GFF5558	0.20	+0.6
2,568,022	-		GFF5558	0.20	+0.1
2,568,037	-		GFF5558	0.21	-0.1