Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5363

Experiment: Ying_sugar7 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep B; time point 3
2,365,307	+		GFF5361	0.89	+0.7
2,365,308	-		GFF5361	0.89	+0.2
2,365,308	-		GFF5361	0.89	-0.4
2,365,308	-		GFF5361	0.89	-0.5
2,365,424	+				-1.2
2,365,424	+				+0.4
2,365,604	+				+0.2
2,365,607	+				-0.2
2,365,607	+				-0.2
2,365,607	+				+0.2
2,365,607	+				+0.1
2,365,608	-				-0.2
2,365,608	-				+0.2
2,365,608	-				-1.2
2,365,608	-				-0.0
2,365,744	-		GFF5362	0.33	+0.0
2,365,744	-		GFF5362	0.33	+0.2
2,365,744	-		GFF5362	0.33	-0.3
2,365,744	-		GFF5362	0.33	+0.5
2,365,744	-		GFF5362	0.33	-0.2
2,365,923	-		GFF5362	0.80	+0.8
2,365,995	-				-0.3
2,366,428	-		GFF5363	0.21	-0.0
2,366,583	+		GFF5363	0.34	+0.1
2,366,584	-		GFF5363	0.34	+0.0
2,366,584	-		GFF5363	0.34	+2.3
2,366,779	-		GFF5363	0.51	-1.3
2,366,814	+		GFF5363	0.54	-0.7
2,366,851	-		GFF5363	0.57	-0.1
2,366,922	+		GFF5363	0.63	+0.0
2,366,922	+		GFF5363	0.63	-0.1
2,366,922	+		GFF5363	0.63	-0.0
2,366,923	-		GFF5363	0.63	-0.2
2,366,923	-		GFF5363	0.63	+2.6
2,366,961	+		GFF5363	0.66	-0.2
2,366,961	+		GFF5363	0.66	+1.4
2,367,429	+		GFF5364	0.18	+0.3
2,367,429	+		GFF5364	0.18	+0.1
2,367,430	-		GFF5364	0.19	+0.8
2,367,430	-		GFF5364	0.19	-0.2
2,367,624	+		GFF5364	0.67	+0.3
2,367,625	-		GFF5364	0.67	+0.1
2,367,681	+		GFF5364	0.81	+0.6
2,367,682	-		GFF5364	0.82	+2.0
2,367,682	-		GFF5364	0.82	+0.3
2,367,682	-		GFF5364	0.82	+0.8
2,367,682	-		GFF5364	0.82	-1.4
2,367,682	-		GFF5364	0.82	+0.6
2,367,682	-		GFF5364	0.82	-0.0
2,367,777	+		GFF5365	0.16	-0.1
2,367,777	+		GFF5365	0.16	-0.2
2,367,778	-		GFF5365	0.16	+0.5
2,367,863	+		GFF5365	0.60	-0.3
2,367,863	+		GFF5365	0.60	+0.1
2,367,864	-		GFF5365	0.61	+0.8
2,367,864	-		GFF5365	0.61	+0.2
2,367,864	-		GFF5365	0.61	+0.7
2,367,956	-				-0.3
2,368,024	+				+0.1
2,368,222	+		GFF5366	0.19	+0.6
2,368,222	+		GFF5366	0.19	+0.8
2,368,222	+		GFF5366	0.19	+0.1
2,368,222	+		GFF5366	0.19	+2.1
2,368,222	+		GFF5366	0.19	+0.4
2,368,223	-		GFF5366	0.19	-0.0
2,368,223	-		GFF5366	0.19	-0.4
2,368,223	-		GFF5366	0.19	+0.2
2,368,348	+		GFF5366	0.31	+1.6
2,368,349	-		GFF5366	0.31	+0.4