Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5189

Experiment: Ying_sugar7 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5188 and GFF5189 are separated by 9 nucleotidesGFF5189 and GFF5190 are separated by 100 nucleotides GFF5188 - Alanyl-tRNA synthetase (EC 6.1.1.7), at 2,203,084 to 2,205,705 GFF5188 GFF5189 - hypothetical protein, at 2,205,715 to 2,205,873 GFF5189 GFF5190 - Aldehyde dehydrogenase B (EC 1.2.1.22), at 2,205,974 to 2,207,464 GFF5190 Position (kb) 2205 2206Strain fitness (log2 ratio) -1 0 1at 2206.229 kb on + strand, within GFF5190at 2206.229 kb on + strand, within GFF5190at 2206.229 kb on + strand, within GFF5190at 2206.230 kb on - strand, within GFF5190at 2206.322 kb on + strand, within GFF5190at 2206.845 kb on - strand, within GFF5190

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 3
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2,206,229 + GFF5190 0.17 -0.4
2,206,229 + GFF5190 0.17 -0.5
2,206,229 + GFF5190 0.17 -0.9
2,206,230 - GFF5190 0.17 -0.6
2,206,322 + GFF5190 0.23 -0.4
2,206,845 - GFF5190 0.58 -0.6

Or see this region's nucleotide sequence