Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5108

Experiment: Ying_sugar7 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep B; time point 3
2,120,035	+				+0.8
2,120,035	+				-1.3
2,120,036	-				-0.9
2,120,036	-				+0.0
2,120,070	-				-0.0
2,120,391	+				+0.3
2,120,980	-		GFF5108	0.11	-0.1
2,120,980	-		GFF5108	0.11	+0.1
2,120,980	-		GFF5108	0.11	-0.3
2,120,985	+		GFF5108	0.11	-0.0
2,120,985	+		GFF5108	0.11	-0.6
2,121,168	+		GFF5108	0.39	+0.0
2,121,267	+		GFF5108	0.54	-0.6
2,121,268	-		GFF5108	0.54	-0.1
2,121,268	-		GFF5108	0.54	-0.1
2,121,268	-		GFF5108	0.54	+1.4
2,121,767	-		GFF5109	0.58	-0.2
2,121,965	+				+0.4
2,121,965	+				+0.0
2,121,965	+				-0.2
2,122,008	+				-4.2
2,122,008	+				-2.6
2,122,009	-				-3.2
2,122,009	-				-1.2
2,122,048	-				-2.4
2,122,048	-				-2.8
2,122,051	-				-3.7
2,122,051	-				-0.8
2,122,101	+		GFF5110	0.12	-3.0
2,122,204	-		GFF5110	0.24	-1.6
2,122,204	-		GFF5110	0.24	-3.5
2,122,260	+		GFF5110	0.31	-2.3
2,122,261	-		GFF5110	0.31	-2.3
2,122,261	-		GFF5110	0.31	-1.8
2,122,261	-		GFF5110	0.31	-2.3
2,122,356	+		GFF5110	0.42	-3.3
2,122,515	+		GFF5110	0.60	-4.2
2,122,515	+		GFF5110	0.60	-2.2
2,122,515	+		GFF5110	0.60	-2.6
2,122,515	+		GFF5110	0.60	-2.6
2,122,515	+		GFF5110	0.60	-3.1
2,122,516	-		GFF5110	0.60	-0.6
2,122,516	-		GFF5110	0.60	-3.3