Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4967

Experiment: Ying_sugar7 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4965 and GFF4966 overlap by 4 nucleotidesGFF4966 and GFF4967 are separated by 152 nucleotidesGFF4967 and GFF4968 are separated by 0 nucleotides GFF4965 - Putative cytoplasmic protein, at 1,982,134 to 1,982,346 GFF4965 GFF4966 - putative hydrolase, at 1,982,343 to 1,983,170 GFF4966 GFF4967 - Acetoacetyl-CoA synthetase (EC 6.2.1.16) / Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 1,983,323 to 1,985,026 GFF4967 GFF4968 - Chromate transport protein ChrA, at 1,985,027 to 1,986,370 GFF4968 Position (kb) 1983 1984 1985 1986Strain fitness (log2 ratio) -1 0 1at 1982.518 kb on + strand, within GFF4966at 1982.518 kb on + strand, within GFF4966at 1982.518 kb on + strand, within GFF4966at 1982.519 kb on - strand, within GFF4966at 1982.519 kb on - strand, within GFF4966at 1982.519 kb on - strand, within GFF4966at 1982.525 kb on - strand, within GFF4966at 1982.525 kb on - strand, within GFF4966at 1982.617 kb on + strand, within GFF4966at 1982.618 kb on - strand, within GFF4966at 1982.618 kb on - strand, within GFF4966at 1982.618 kb on - strand, within GFF4966at 1982.677 kb on + strand, within GFF4966at 1982.677 kb on + strand, within GFF4966at 1982.678 kb on - strand, within GFF4966at 1983.004 kb on + strand, within GFF4966at 1983.004 kb on + strand, within GFF4966at 1983.005 kb on - strand, within GFF4966at 1983.005 kb on - strand, within GFF4966at 1983.353 kb on + strandat 1983.559 kb on + strand, within GFF4967at 1983.560 kb on - strand, within GFF4967at 1983.560 kb on - strand, within GFF4967at 1983.669 kb on + strand, within GFF4967at 1983.731 kb on + strand, within GFF4967at 1983.731 kb on + strand, within GFF4967at 1983.731 kb on + strand, within GFF4967at 1983.732 kb on - strand, within GFF4967at 1983.732 kb on - strand, within GFF4967at 1983.732 kb on - strand, within GFF4967at 1984.091 kb on + strand, within GFF4967at 1984.154 kb on + strand, within GFF4967at 1984.192 kb on + strand, within GFF4967at 1984.385 kb on + strand, within GFF4967at 1984.414 kb on + strand, within GFF4967at 1984.415 kb on - strand, within GFF4967at 1984.721 kb on + strand, within GFF4967at 1984.745 kb on + strand, within GFF4967at 1984.746 kb on - strand, within GFF4967at 1984.746 kb on - strand, within GFF4967at 1985.532 kb on + strand, within GFF4968at 1985.533 kb on - strand, within GFF4968at 1985.533 kb on - strand, within GFF4968at 1985.538 kb on + strand, within GFF4968at 1985.539 kb on - strand, within GFF4968at 1985.539 kb on - strand, within GFF4968at 1985.539 kb on - strand, within GFF4968at 1985.539 kb on - strand, within GFF4968at 1985.539 kb on - strand, within GFF4968at 1985.553 kb on + strand, within GFF4968at 1985.554 kb on - strand, within GFF4968at 1985.554 kb on - strand, within GFF4968at 1986.001 kb on - strand, within GFF4968at 1986.001 kb on - strand, within GFF4968

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 3
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1,982,518 + GFF4966 0.21 +0.8
1,982,518 + GFF4966 0.21 +0.8
1,982,518 + GFF4966 0.21 +0.5
1,982,519 - GFF4966 0.21 -0.2
1,982,519 - GFF4966 0.21 +0.1
1,982,519 - GFF4966 0.21 +0.3
1,982,525 - GFF4966 0.22 -0.0
1,982,525 - GFF4966 0.22 -0.0
1,982,617 + GFF4966 0.33 -0.5
1,982,618 - GFF4966 0.33 +0.4
1,982,618 - GFF4966 0.33 -0.8
1,982,618 - GFF4966 0.33 -0.5
1,982,677 + GFF4966 0.40 -0.9
1,982,677 + GFF4966 0.40 +0.4
1,982,678 - GFF4966 0.40 +0.6
1,983,004 + GFF4966 0.80 +0.2
1,983,004 + GFF4966 0.80 +0.4
1,983,005 - GFF4966 0.80 -0.1
1,983,005 - GFF4966 0.80 +0.1
1,983,353 + -0.1
1,983,559 + GFF4967 0.14 -1.0
1,983,560 - GFF4967 0.14 +0.0
1,983,560 - GFF4967 0.14 -0.5
1,983,669 + GFF4967 0.20 -0.3
1,983,731 + GFF4967 0.24 +0.1
1,983,731 + GFF4967 0.24 +0.2
1,983,731 + GFF4967 0.24 -0.6
1,983,732 - GFF4967 0.24 +0.2
1,983,732 - GFF4967 0.24 -0.2
1,983,732 - GFF4967 0.24 +0.2
1,984,091 + GFF4967 0.45 +1.5
1,984,154 + GFF4967 0.49 +0.2
1,984,192 + GFF4967 0.51 -0.1
1,984,385 + GFF4967 0.62 -1.0
1,984,414 + GFF4967 0.64 +0.3
1,984,415 - GFF4967 0.64 -0.3
1,984,721 + GFF4967 0.82 +0.5
1,984,745 + GFF4967 0.83 +0.4
1,984,746 - GFF4967 0.84 +0.5
1,984,746 - GFF4967 0.84 +1.1
1,985,532 + GFF4968 0.38 -0.2
1,985,533 - GFF4968 0.38 -0.4
1,985,533 - GFF4968 0.38 -1.0
1,985,538 + GFF4968 0.38 -0.1
1,985,539 - GFF4968 0.38 -0.7
1,985,539 - GFF4968 0.38 +0.1
1,985,539 - GFF4968 0.38 -0.3
1,985,539 - GFF4968 0.38 -0.3
1,985,539 - GFF4968 0.38 -0.1
1,985,553 + GFF4968 0.39 +0.1
1,985,554 - GFF4968 0.39 +0.4
1,985,554 - GFF4968 0.39 +0.8
1,986,001 - GFF4968 0.72 +0.2
1,986,001 - GFF4968 0.72 -0.2

Or see this region's nucleotide sequence