Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4966

Experiment: Ying_sugar7 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4963 and GFF4964 are separated by 40 nucleotidesGFF4964 and GFF4965 are separated by 3 nucleotidesGFF4965 and GFF4966 overlap by 4 nucleotidesGFF4966 and GFF4967 are separated by 152 nucleotides GFF4963 - hypothetical protein, at 1,981,113 to 1,981,487 GFF4963 GFF4964 - 3'-5' exonuclease domain protein, at 1,981,528 to 1,982,130 GFF4964 GFF4965 - Putative cytoplasmic protein, at 1,982,134 to 1,982,346 GFF4965 GFF4966 - putative hydrolase, at 1,982,343 to 1,983,170 GFF4966 GFF4967 - Acetoacetyl-CoA synthetase (EC 6.2.1.16) / Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 1,983,323 to 1,985,026 GFF4967 Position (kb) 1982 1983 1984Strain fitness (log2 ratio) -1 0 1at 1981.405 kb on + strand, within GFF4963at 1981.406 kb on - strand, within GFF4963at 1981.406 kb on - strand, within GFF4963at 1981.406 kb on - strand, within GFF4963at 1981.406 kb on - strand, within GFF4963at 1981.515 kb on - strandat 1981.839 kb on + strand, within GFF4964at 1982.071 kb on + strandat 1982.255 kb on + strand, within GFF4965at 1982.255 kb on + strand, within GFF4965at 1982.255 kb on + strand, within GFF4965at 1982.255 kb on + strand, within GFF4965at 1982.256 kb on - strand, within GFF4965at 1982.256 kb on - strand, within GFF4965at 1982.256 kb on - strand, within GFF4965at 1982.291 kb on + strand, within GFF4965at 1982.291 kb on + strand, within GFF4965at 1982.292 kb on - strand, within GFF4965at 1982.292 kb on - strand, within GFF4965at 1982.292 kb on - strand, within GFF4965at 1982.518 kb on + strand, within GFF4966at 1982.518 kb on + strand, within GFF4966at 1982.518 kb on + strand, within GFF4966at 1982.519 kb on - strand, within GFF4966at 1982.519 kb on - strand, within GFF4966at 1982.519 kb on - strand, within GFF4966at 1982.525 kb on - strand, within GFF4966at 1982.525 kb on - strand, within GFF4966at 1982.617 kb on + strand, within GFF4966at 1982.618 kb on - strand, within GFF4966at 1982.618 kb on - strand, within GFF4966at 1982.618 kb on - strand, within GFF4966at 1982.677 kb on + strand, within GFF4966at 1982.677 kb on + strand, within GFF4966at 1982.678 kb on - strand, within GFF4966at 1983.004 kb on + strand, within GFF4966at 1983.004 kb on + strand, within GFF4966at 1983.005 kb on - strand, within GFF4966at 1983.005 kb on - strand, within GFF4966at 1983.353 kb on + strandat 1983.559 kb on + strand, within GFF4967at 1983.560 kb on - strand, within GFF4967at 1983.560 kb on - strand, within GFF4967at 1983.669 kb on + strand, within GFF4967at 1983.731 kb on + strand, within GFF4967at 1983.731 kb on + strand, within GFF4967at 1983.731 kb on + strand, within GFF4967at 1983.732 kb on - strand, within GFF4967at 1983.732 kb on - strand, within GFF4967at 1983.732 kb on - strand, within GFF4967at 1984.091 kb on + strand, within GFF4967at 1984.154 kb on + strand, within GFF4967

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 3
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1,981,405 + GFF4963 0.78 -0.1
1,981,406 - GFF4963 0.78 -1.0
1,981,406 - GFF4963 0.78 -0.0
1,981,406 - GFF4963 0.78 -0.1
1,981,406 - GFF4963 0.78 +1.0
1,981,515 - +0.1
1,981,839 + GFF4964 0.52 -0.2
1,982,071 + +0.2
1,982,255 + GFF4965 0.57 -0.3
1,982,255 + GFF4965 0.57 -0.3
1,982,255 + GFF4965 0.57 +0.3
1,982,255 + GFF4965 0.57 +0.0
1,982,256 - GFF4965 0.57 +0.4
1,982,256 - GFF4965 0.57 +0.2
1,982,256 - GFF4965 0.57 +0.2
1,982,291 + GFF4965 0.74 +0.3
1,982,291 + GFF4965 0.74 +0.7
1,982,292 - GFF4965 0.74 -0.2
1,982,292 - GFF4965 0.74 +0.1
1,982,292 - GFF4965 0.74 -0.4
1,982,518 + GFF4966 0.21 +0.8
1,982,518 + GFF4966 0.21 +0.8
1,982,518 + GFF4966 0.21 +0.5
1,982,519 - GFF4966 0.21 -0.2
1,982,519 - GFF4966 0.21 +0.1
1,982,519 - GFF4966 0.21 +0.3
1,982,525 - GFF4966 0.22 -0.0
1,982,525 - GFF4966 0.22 -0.0
1,982,617 + GFF4966 0.33 -0.5
1,982,618 - GFF4966 0.33 +0.4
1,982,618 - GFF4966 0.33 -0.8
1,982,618 - GFF4966 0.33 -0.5
1,982,677 + GFF4966 0.40 -0.9
1,982,677 + GFF4966 0.40 +0.4
1,982,678 - GFF4966 0.40 +0.6
1,983,004 + GFF4966 0.80 +0.2
1,983,004 + GFF4966 0.80 +0.4
1,983,005 - GFF4966 0.80 -0.1
1,983,005 - GFF4966 0.80 +0.1
1,983,353 + -0.1
1,983,559 + GFF4967 0.14 -1.0
1,983,560 - GFF4967 0.14 +0.0
1,983,560 - GFF4967 0.14 -0.5
1,983,669 + GFF4967 0.20 -0.3
1,983,731 + GFF4967 0.24 +0.1
1,983,731 + GFF4967 0.24 +0.2
1,983,731 + GFF4967 0.24 -0.6
1,983,732 - GFF4967 0.24 +0.2
1,983,732 - GFF4967 0.24 -0.2
1,983,732 - GFF4967 0.24 +0.2
1,984,091 + GFF4967 0.45 +1.5
1,984,154 + GFF4967 0.49 +0.2

Or see this region's nucleotide sequence