Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4521

Experiment: Ying_sugar7 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep B; time point 3
1,446,567	-				-0.8
1,446,567	-				-0.1
1,446,567	-				+0.3
1,446,567	-				+0.2
1,446,724	+				-0.3
1,446,724	+				-0.1
1,446,724	+				+0.1
1,446,725	-				-0.1
1,446,725	-				-0.8
1,446,725	-				-0.4
1,446,725	-				+0.4
1,446,760	+				-0.7
1,446,761	-				+0.5
1,446,761	-				+0.3
1,446,761	-				+0.8
1,447,034	+		GFF4520	0.72	-0.4
1,447,034	+		GFF4520	0.72	+0.9
1,447,034	+		GFF4520	0.72	-0.0
1,447,034	+		GFF4520	0.72	+0.5
1,447,035	-		GFF4520	0.73	+0.7
1,447,130	+				-1.5
1,447,130	+				+1.3
1,447,130	+				-0.4
1,447,131	-				+2.4
1,447,255	+				+5.4
1,447,256	-				+5.5
1,447,256	-				+5.4
1,447,589	+		GFF4521	0.16	+4.8
1,447,589	+		GFF4521	0.16	+5.2
1,447,589	+		GFF4521	0.16	+4.7
1,447,590	-		GFF4521	0.16	+4.9
1,447,590	-		GFF4521	0.16	+4.9
1,447,590	-		GFF4521	0.16	+4.3
1,447,590	-		GFF4521	0.16	+5.8
1,447,590	-		GFF4521	0.16	+5.0
1,447,590	-		GFF4521	0.16	+4.9
1,447,590	-		GFF4521	0.16	+4.1
1,447,590	-		GFF4521	0.16	+4.9
1,447,592	+		GFF4521	0.16	+6.2
1,447,592	+		GFF4521	0.16	+4.8
1,447,593	-		GFF4521	0.16	+5.2
1,447,593	-		GFF4521	0.16	+5.6
1,447,593	-		GFF4521	0.16	+5.0
1,447,593	-		GFF4521	0.16	+5.8
1,447,593	-		GFF4521	0.16	+5.5
1,447,979	+		GFF4521	0.32	+4.7
1,447,979	+		GFF4521	0.32	+5.0
1,448,018	+		GFF4521	0.34	+6.0
1,448,019	-		GFF4521	0.34	+5.5
1,448,222	+		GFF4521	0.43	+5.7
1,448,360	+		GFF4521	0.49	+5.1
1,448,360	+		GFF4521	0.49	+5.0
1,448,360	+		GFF4521	0.49	+5.3
1,448,361	-		GFF4521	0.49	+5.0
1,448,405	+		GFF4521	0.51	+5.0
1,448,405	+		GFF4521	0.51	+5.3
1,448,405	+		GFF4521	0.51	+5.5
1,448,406	-		GFF4521	0.51	+6.1
1,448,406	-		GFF4521	0.51	+5.4
1,448,406	-		GFF4521	0.51	+4.9
1,448,406	-		GFF4521	0.51	+4.9
1,448,406	-		GFF4521	0.51	+4.9
1,448,771	+		GFF4521	0.66	+5.3
1,448,771	+		GFF4521	0.66	+5.2
1,448,771	+		GFF4521	0.66	+5.5
1,448,772	-		GFF4521	0.66	+5.2
1,448,813	+		GFF4521	0.68	+5.8
1,448,813	+		GFF4521	0.68	+5.6
1,448,813	+		GFF4521	0.68	+6.2
1,448,813	+		GFF4521	0.68	+4.9
1,448,814	-		GFF4521	0.68	+5.3
1,448,814	-		GFF4521	0.68	+5.0
1,448,861	+		GFF4521	0.70	+5.5
1,448,861	+		GFF4521	0.70	+5.0
1,448,862	-		GFF4521	0.70	+4.2
1,449,747	+				-0.2
1,449,748	-				+1.4
1,449,924	+		GFF4522	0.19	-0.2
1,449,925	-		GFF4522	0.19	-0.0
1,449,954	+		GFF4522	0.21	-0.7
1,449,954	+		GFF4522	0.21	-0.8
1,449,955	-		GFF4522	0.21	-0.0
1,450,285	-		GFF4522	0.42	-0.8
1,450,473	+		GFF4522	0.55	-0.1
1,450,473	+		GFF4522	0.55	-0.2
1,450,473	+		GFF4522	0.55	+1.1
1,450,473	+		GFF4522	0.55	+0.5
1,450,474	-		GFF4522	0.55	-0.8
1,450,474	-		GFF4522	0.55	+0.2
1,450,474	-		GFF4522	0.55	+0.6
1,450,474	-		GFF4522	0.55	+1.4