Experiment: Ying_sugar7 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF448 and GFF449 are separated by 2 nucleotides GFF449 and GFF450 are separated by 76 nucleotides GFF450 and GFF451 are separated by 100 nucleotides GFF451 and GFF452 are separated by 11 nucleotides
GFF448 - hypothetical protein, at 117,176 to 118,393
GFF448
GFF449 - hypothetical protein, at 118,396 to 118,677
GFF449
GFF450 - PhnB protein, at 118,754 to 119,119
GFF450
GFF451 - PhnB protein, at 119,220 to 119,651
GFF451
GFF452 - FIG00454722: hypothetical protein, at 119,663 to 120,205
GFF452
Position (kb) 118
119 Strain fitness (log2 ratio) -2
-1
0
1
2 at 117.732 kb on - strand, within GFF448 at 117.732 kb on - strand, within GFF448 at 117.786 kb on - strand, within GFF448 at 117.810 kb on - strand, within GFF448 at 117.810 kb on - strand, within GFF448 at 118.032 kb on - strand, within GFF448 at 118.121 kb on + strand, within GFF448 at 118.121 kb on + strand, within GFF448 at 118.121 kb on + strand, within GFF448 at 118.122 kb on - strand, within GFF448 at 118.122 kb on - strand, within GFF448 at 118.122 kb on - strand, within GFF448 at 118.122 kb on - strand, within GFF448 at 118.122 kb on - strand, within GFF448 at 118.122 kb on - strand, within GFF448 at 118.247 kb on + strand, within GFF448 at 118.247 kb on + strand, within GFF448 at 118.266 kb on - strand, within GFF448 at 118.266 kb on - strand, within GFF448 at 118.266 kb on - strand, within GFF448 at 118.361 kb on + strand at 118.361 kb on + strand at 118.362 kb on - strand at 118.421 kb on + strand at 118.421 kb on + strand at 118.443 kb on - strand, within GFF449 at 118.582 kb on + strand, within GFF449 at 118.582 kb on + strand, within GFF449 at 118.583 kb on - strand, within GFF449 at 118.583 kb on - strand, within GFF449 at 118.583 kb on - strand, within GFF449 at 118.583 kb on - strand, within GFF449 at 118.829 kb on + strand, within GFF450 at 118.829 kb on + strand, within GFF450 at 118.830 kb on - strand, within GFF450 at 119.314 kb on - strand, within GFF451 at 119.394 kb on + strand, within GFF451 at 119.463 kb on + strand, within GFF451 at 119.463 kb on + strand, within GFF451 at 119.464 kb on - strand, within GFF451 at 119.571 kb on + strand, within GFF451
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 3 remove 117,732 - GFF448 0.46 +0.6 117,732 - GFF448 0.46 -0.1 117,786 - GFF448 0.50 -0.3 117,810 - GFF448 0.52 +0.6 117,810 - GFF448 0.52 +0.1 118,032 - GFF448 0.70 +0.0 118,121 + GFF448 0.78 +0.2 118,121 + GFF448 0.78 +1.3 118,121 + GFF448 0.78 -0.4 118,122 - GFF448 0.78 +0.9 118,122 - GFF448 0.78 +0.9 118,122 - GFF448 0.78 -0.4 118,122 - GFF448 0.78 +0.3 118,122 - GFF448 0.78 +1.3 118,122 - GFF448 0.78 +0.0 118,247 + GFF448 0.88 -0.0 118,247 + GFF448 0.88 -0.6 118,266 - GFF448 0.89 -0.8 118,266 - GFF448 0.89 +0.2 118,266 - GFF448 0.89 -1.9 118,361 + -0.4 118,361 + +0.3 118,362 - -0.0 118,421 + -0.5 118,421 + -1.0 118,443 - GFF449 0.17 -2.3 118,582 + GFF449 0.66 +0.3 118,582 + GFF449 0.66 -0.9 118,583 - GFF449 0.66 -0.5 118,583 - GFF449 0.66 -0.7 118,583 - GFF449 0.66 -0.6 118,583 - GFF449 0.66 -0.1 118,829 + GFF450 0.20 -0.1 118,829 + GFF450 0.20 +0.2 118,830 - GFF450 0.21 -0.5 119,314 - GFF451 0.22 -0.3 119,394 + GFF451 0.40 +0.2 119,463 + GFF451 0.56 +0.8 119,463 + GFF451 0.56 -0.3 119,464 - GFF451 0.56 +1.9 119,571 + GFF451 0.81 +0.5
Or see this region's nucleotide sequence