Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4291

Experiment: Ying_sugar7 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep B; time point 3
1,215,802	-				+1.8
1,215,802	-				-1.2
1,215,845	-				-1.2
1,215,853	+				-3.4
1,215,853	+				-2.6
1,215,854	-				-3.9
1,215,854	-				-4.9
1,215,854	-				-4.4
1,215,854	-				-2.9
1,215,854	-				-3.0
1,215,854	-				-3.9
1,215,854	-				-4.2
1,216,126	+		GFF4290	0.29	-3.8
1,216,127	-		GFF4290	0.29	-3.8
1,216,129	+		GFF4290	0.29	-3.4
1,216,130	-		GFF4290	0.30	-2.5
1,216,165	+		GFF4290	0.33	-0.8
1,216,165	+		GFF4290	0.33	-2.4
1,216,165	+		GFF4290	0.33	-3.1
1,216,165	+		GFF4290	0.33	-3.6
1,216,165	+		GFF4290	0.33	-4.3
1,216,166	-		GFF4290	0.33	-2.9
1,216,166	-		GFF4290	0.33	-3.5
1,216,166	-		GFF4290	0.33	+0.2
1,216,166	-		GFF4290	0.33	-3.3
1,216,166	-		GFF4290	0.33	-3.9
1,216,166	-		GFF4290	0.33	-2.8
1,216,829	+				-0.9
1,216,829	+				-1.1
1,216,830	-				-1.5
1,216,830	-				-0.8
1,216,990	-		GFF4291	0.25	-2.2
1,217,220	+		GFF4291	0.56	-4.3
1,217,220	+		GFF4291	0.56	-2.0
1,217,220	+		GFF4291	0.56	-2.0
1,217,220	+		GFF4291	0.56	-0.2
1,217,220	+		GFF4291	0.56	-2.8
1,217,221	-		GFF4291	0.56	-4.2
1,217,221	-		GFF4291	0.56	-3.8
1,217,532	+				-2.9
1,217,532	+				-2.1
1,217,532	+				-0.2
1,217,533	-				-1.8
1,217,533	-				-3.7
1,217,618	+		GFF4292	0.12	-4.3
1,217,630	+		GFF4292	0.16	-6.1
1,217,630	+		GFF4292	0.16	-4.3
1,218,091	+				-5.5
1,218,091	+				-3.3
1,218,091	+				-5.8
1,218,091	+				-2.4
1,218,092	-				-5.2
1,218,092	-				-3.7
1,218,092	-				-5.4
1,218,350	-		GFF4293	0.21	-1.8