Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4105

Experiment: Ying_sugar7 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep B; time point 3
1,014,968	+		GFF4104	0.34	+1.6
1,015,115	+		GFF4104	0.48	+0.1
1,015,115	+		GFF4104	0.48	-0.2
1,015,116	-		GFF4104	0.48	-0.3
1,015,116	-		GFF4104	0.48	-0.2
1,015,116	-		GFF4104	0.48	+0.0
1,015,116	-		GFF4104	0.48	-0.9
1,015,663	-				-0.2
1,015,798	+				-0.7
1,015,873	+		GFF4105	0.14	-0.2
1,015,952	-		GFF4105	0.20	+1.0
1,015,975	+		GFF4105	0.22	+0.4
1,015,975	+		GFF4105	0.22	-0.1
1,015,975	+		GFF4105	0.22	-1.5
1,015,975	+		GFF4105	0.22	-0.2
1,015,975	+		GFF4105	0.22	-0.4
1,015,976	-		GFF4105	0.22	+0.1
1,015,976	-		GFF4105	0.22	-1.0
1,015,976	-		GFF4105	0.22	+0.2
1,015,976	-		GFF4105	0.22	-0.2
1,016,129	-		GFF4105	0.35	-0.5
1,016,425	+		GFF4105	0.60	-0.0
1,016,426	-		GFF4105	0.60	-0.2
1,016,426	-		GFF4105	0.60	-0.1
1,017,174	+				-0.9
1,017,174	+				+0.3
1,017,174	+				+0.5
1,017,175	-				+0.8
1,017,175	-				+0.1
1,017,223	+				+0.2
1,017,223	+				-0.1
1,017,223	+				+0.7
1,017,225	+				-0.1
1,017,225	+				-2.8
1,017,382	+		GFF4106	0.15	+0.2
1,017,382	+		GFF4106	0.15	+0.5
1,017,382	+		GFF4106	0.15	-0.3
1,017,382	+		GFF4106	0.15	+0.3
1,017,382	+		GFF4106	0.15	-0.1
1,017,382	+		GFF4106	0.15	-0.6
1,017,383	-		GFF4106	0.15	-0.1
1,017,383	-		GFF4106	0.15	+0.3
1,017,383	-		GFF4106	0.15	-0.8
1,017,383	-		GFF4106	0.15	-0.2
1,017,383	-		GFF4106	0.15	+0.1
1,017,383	-		GFF4106	0.15	+0.1
1,017,411	+		GFF4106	0.20	+0.4
1,017,411	+		GFF4106	0.20	+0.1
1,017,411	+		GFF4106	0.20	-0.4
1,017,411	+		GFF4106	0.20	-0.1
1,017,412	-		GFF4106	0.20	-0.5
1,017,412	-		GFF4106	0.20	+0.8
1,017,412	-		GFF4106	0.20	-0.7
1,017,412	-		GFF4106	0.20	-0.6
1,017,412	-		GFF4106	0.20	-1.8
1,017,687	+		GFF4106	0.65	-0.2
1,017,688	-		GFF4106	0.66	-0.1
1,017,780	+		GFF4106	0.81	+1.4
1,017,780	+		GFF4106	0.81	-0.6
1,017,780	+		GFF4106	0.81	-1.2
1,017,781	-		GFF4106	0.81	+1.0
1,017,781	-		GFF4106	0.81	-0.6
1,017,781	-		GFF4106	0.81	-0.1
1,017,781	-		GFF4106	0.81	-0.2
1,017,781	-		GFF4106	0.81	+0.2
1,017,781	-		GFF4106	0.81	+0.0
1,017,781	-		GFF4106	0.81	-0.4
1,017,810	+		GFF4106	0.86	-0.1
1,017,810	+		GFF4106	0.86	+0.2
1,017,810	+		GFF4106	0.86	+0.2
1,017,810	+		GFF4106	0.86	+0.9
1,017,810	+		GFF4106	0.86	-0.7
1,017,811	-		GFF4106	0.86	+1.0