Experiment: Ying_sugar7 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4075 and GFF4076 are separated by 10 nucleotides GFF4076 and GFF4077 are separated by 40 nucleotides GFF4077 and GFF4078 overlap by 1 nucleotides
GFF4075 - Flagellar hook protein FlgE, at 988,075 to 989,268
GFF4075
GFF4076 - Flagellar basal-body rod protein FlgF, at 989,279 to 990,007
GFF4076
GFF4077 - Flagellar basal-body rod protein FlgG, at 990,048 to 990,836
GFF4077
GFF4078 - Flagellar L-ring protein FlgH, at 990,836 to 991,495
GFF4078
Position (kb) 989
990
991 Strain fitness (log2 ratio) -1
0
1
2 at 988.393 kb on + strand, within GFF4075 at 988.393 kb on + strand, within GFF4075 at 988.429 kb on + strand, within GFF4075 at 988.525 kb on + strand, within GFF4075 at 988.525 kb on + strand, within GFF4075 at 988.526 kb on - strand, within GFF4075 at 988.598 kb on - strand, within GFF4075 at 988.660 kb on + strand, within GFF4075 at 988.699 kb on + strand, within GFF4075 at 988.699 kb on + strand, within GFF4075 at 988.699 kb on + strand, within GFF4075 at 988.700 kb on - strand, within GFF4075 at 988.700 kb on - strand, within GFF4075 at 988.846 kb on + strand, within GFF4075 at 988.846 kb on + strand, within GFF4075 at 988.847 kb on - strand, within GFF4075 at 988.967 kb on - strand, within GFF4075 at 988.967 kb on - strand, within GFF4075 at 989.200 kb on + strand at 989.200 kb on + strand at 989.430 kb on - strand, within GFF4076 at 989.537 kb on + strand, within GFF4076 at 989.538 kb on - strand, within GFF4076 at 989.541 kb on - strand, within GFF4076 at 989.541 kb on - strand, within GFF4076 at 989.573 kb on + strand, within GFF4076 at 989.573 kb on + strand, within GFF4076 at 989.573 kb on + strand, within GFF4076 at 990.183 kb on + strand, within GFF4077 at 990.387 kb on + strand, within GFF4077 at 990.387 kb on + strand, within GFF4077 at 990.388 kb on - strand, within GFF4077 at 990.766 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 3 remove 988,393 + GFF4075 0.27 -0.5 988,393 + GFF4075 0.27 +1.8 988,429 + GFF4075 0.30 -0.1 988,525 + GFF4075 0.38 +0.6 988,525 + GFF4075 0.38 -0.5 988,526 - GFF4075 0.38 -0.2 988,598 - GFF4075 0.44 -0.2 988,660 + GFF4075 0.49 +0.4 988,699 + GFF4075 0.52 -0.4 988,699 + GFF4075 0.52 +1.2 988,699 + GFF4075 0.52 -0.1 988,700 - GFF4075 0.52 -0.1 988,700 - GFF4075 0.52 +0.6 988,846 + GFF4075 0.65 -0.2 988,846 + GFF4075 0.65 -0.0 988,847 - GFF4075 0.65 +0.5 988,967 - GFF4075 0.75 +0.6 988,967 - GFF4075 0.75 +0.3 989,200 + -0.1 989,200 + -0.0 989,430 - GFF4076 0.21 -0.5 989,537 + GFF4076 0.35 -0.5 989,538 - GFF4076 0.36 -0.2 989,541 - GFF4076 0.36 +0.9 989,541 - GFF4076 0.36 +0.2 989,573 + GFF4076 0.40 -0.8 989,573 + GFF4076 0.40 +0.6 989,573 + GFF4076 0.40 -0.8 990,183 + GFF4077 0.17 -1.3 990,387 + GFF4077 0.43 -0.6 990,387 + GFF4077 0.43 -0.6 990,388 - GFF4077 0.43 +0.8 990,766 - -1.1
Or see this region's nucleotide sequence