Experiment: Ying_sugar7 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4047 and GFF4048 are separated by 83 nucleotides GFF4048 and GFF4049 overlap by 24 nucleotides GFF4049 and GFF4050 are separated by 12 nucleotides GFF4050 and GFF4051 are separated by 10 nucleotides GFF4051 and GFF4052 overlap by 4 nucleotides GFF4052 and GFF4053 are separated by 0 nucleotides
GFF4047 - hypothetical protein, at 967,774 to 968,436
GFF4047
GFF4048 - hypothetical protein, at 968,520 to 968,633
GFF4048
GFF4049 - hypothetical protein, at 968,610 to 969,227
GFF4049
GFF4050 - hypothetical protein, at 969,240 to 969,977
GFF4050
GFF4051 - hypothetical protein, at 969,988 to 970,341
GFF4051
GFF4052 - hypothetical protein, at 970,338 to 970,748
GFF4052
GFF4053 - Sensory box histidine kinase, at 970,749 to 972,344
GFF4053
Position (kb) 969
970 Strain fitness (log2 ratio) -2
-1
0
1 at 968.451 kb on + strand at 968.471 kb on + strand at 968.471 kb on + strand at 968.471 kb on + strand at 968.471 kb on + strand at 968.471 kb on + strand at 968.471 kb on + strand at 968.471 kb on + strand at 968.472 kb on - strand at 968.472 kb on - strand at 968.621 kb on - strand at 968.757 kb on + strand, within GFF4049 at 968.757 kb on + strand, within GFF4049 at 968.757 kb on + strand, within GFF4049 at 968.758 kb on - strand, within GFF4049 at 968.958 kb on + strand, within GFF4049 at 968.958 kb on + strand, within GFF4049 at 968.958 kb on + strand, within GFF4049 at 968.959 kb on - strand, within GFF4049 at 968.959 kb on - strand, within GFF4049 at 968.959 kb on - strand, within GFF4049 at 969.267 kb on + strand at 969.267 kb on + strand at 969.267 kb on + strand at 969.268 kb on - strand at 969.268 kb on - strand at 969.330 kb on + strand, within GFF4050 at 969.330 kb on + strand, within GFF4050 at 969.330 kb on + strand, within GFF4050 at 969.331 kb on - strand, within GFF4050 at 969.331 kb on - strand, within GFF4050 at 969.331 kb on - strand, within GFF4050 at 969.861 kb on + strand, within GFF4050 at 969.861 kb on + strand, within GFF4050 at 969.861 kb on + strand, within GFF4050 at 969.861 kb on + strand, within GFF4050 at 969.861 kb on + strand, within GFF4050 at 969.862 kb on - strand, within GFF4050 at 969.862 kb on - strand, within GFF4050 at 969.862 kb on - strand, within GFF4050 at 970.813 kb on + strand at 970.907 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 3 remove 968,451 + -0.0 968,471 + -0.7 968,471 + +0.3 968,471 + -0.4 968,471 + +0.4 968,471 + +0.5 968,471 + -0.2 968,471 + +0.1 968,472 - +0.2 968,472 - +1.2 968,621 - +0.2 968,757 + GFF4049 0.24 -0.7 968,757 + GFF4049 0.24 +0.6 968,757 + GFF4049 0.24 +0.5 968,758 - GFF4049 0.24 -0.0 968,958 + GFF4049 0.56 -0.5 968,958 + GFF4049 0.56 -0.6 968,958 + GFF4049 0.56 +0.8 968,959 - GFF4049 0.56 -0.4 968,959 - GFF4049 0.56 -0.0 968,959 - GFF4049 0.56 +0.2 969,267 + -0.2 969,267 + +1.7 969,267 + -1.0 969,268 - +0.1 969,268 - -0.7 969,330 + GFF4050 0.12 -0.2 969,330 + GFF4050 0.12 -0.5 969,330 + GFF4050 0.12 -0.3 969,331 - GFF4050 0.12 -2.3 969,331 - GFF4050 0.12 -0.4 969,331 - GFF4050 0.12 +0.7 969,861 + GFF4050 0.84 +0.4 969,861 + GFF4050 0.84 -0.4 969,861 + GFF4050 0.84 +0.3 969,861 + GFF4050 0.84 +0.3 969,861 + GFF4050 0.84 +0.1 969,862 - GFF4050 0.84 -2.0 969,862 - GFF4050 0.84 -0.7 969,862 - GFF4050 0.84 +0.1 970,813 + -0.4 970,907 - +0.4
Or see this region's nucleotide sequence