Experiment: Ying_sugar7 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF402 and GFF403 are separated by 7 nucleotides GFF403 and GFF404 are separated by 22 nucleotides GFF404 and GFF405 are separated by 12 nucleotides
GFF402 - FIG00348156: hypothetical protein, at 71,197 to 72,249
GFF402
GFF403 - putative tetratricopeptide repeat family protein, at 72,257 to 73,030
GFF403
GFF404 - Transcriptional regulator, TetR family, at 73,053 to 73,712
GFF404
GFF405 - hypothetical protein, at 73,725 to 74,936
GFF405
Position (kb) 72
73
74 Strain fitness (log2 ratio) -1
0
1 at 71.365 kb on + strand, within GFF402 at 71.366 kb on - strand, within GFF402 at 71.366 kb on - strand, within GFF402 at 71.450 kb on - strand, within GFF402 at 71.450 kb on - strand, within GFF402 at 71.450 kb on - strand, within GFF402 at 71.450 kb on - strand, within GFF402 at 71.450 kb on - strand, within GFF402 at 71.566 kb on + strand, within GFF402 at 71.939 kb on - strand, within GFF402 at 71.939 kb on - strand, within GFF402 at 71.992 kb on + strand, within GFF402 at 72.017 kb on - strand, within GFF402 at 72.037 kb on + strand, within GFF402 at 72.037 kb on + strand, within GFF402 at 72.038 kb on - strand, within GFF402 at 72.160 kb on + strand at 72.160 kb on + strand at 72.161 kb on - strand at 72.291 kb on + strand at 72.400 kb on - strand, within GFF403 at 72.450 kb on + strand, within GFF403 at 72.450 kb on + strand, within GFF403 at 72.450 kb on + strand, within GFF403 at 72.483 kb on + strand, within GFF403 at 72.484 kb on - strand, within GFF403 at 72.661 kb on - strand, within GFF403 at 72.676 kb on - strand, within GFF403 at 72.688 kb on - strand, within GFF403 at 72.789 kb on + strand, within GFF403 at 72.790 kb on - strand, within GFF403 at 72.798 kb on + strand, within GFF403 at 72.798 kb on + strand, within GFF403 at 72.799 kb on - strand, within GFF403 at 72.799 kb on - strand, within GFF403 at 73.069 kb on + strand at 73.210 kb on + strand, within GFF404 at 73.211 kb on - strand, within GFF404 at 73.211 kb on - strand, within GFF404 at 73.228 kb on + strand, within GFF404 at 73.228 kb on + strand, within GFF404 at 73.526 kb on - strand, within GFF404 at 73.567 kb on + strand, within GFF404 at 73.573 kb on + strand, within GFF404 at 73.573 kb on + strand, within GFF404 at 73.573 kb on + strand, within GFF404 at 73.574 kb on - strand, within GFF404 at 73.574 kb on - strand, within GFF404 at 73.574 kb on - strand, within GFF404 at 73.576 kb on + strand, within GFF404 at 73.577 kb on - strand, within GFF404 at 73.577 kb on - strand, within GFF404 at 73.954 kb on + strand, within GFF405 at 73.955 kb on - strand, within GFF405
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 3 remove 71,365 + GFF402 0.16 +0.6 71,366 - GFF402 0.16 +0.6 71,366 - GFF402 0.16 -0.2 71,450 - GFF402 0.24 +0.1 71,450 - GFF402 0.24 +0.3 71,450 - GFF402 0.24 +0.5 71,450 - GFF402 0.24 -0.0 71,450 - GFF402 0.24 +0.4 71,566 + GFF402 0.35 +0.2 71,939 - GFF402 0.70 -0.1 71,939 - GFF402 0.70 -0.3 71,992 + GFF402 0.75 -0.1 72,017 - GFF402 0.78 +0.1 72,037 + GFF402 0.80 -0.5 72,037 + GFF402 0.80 -0.2 72,038 - GFF402 0.80 -0.7 72,160 + -0.8 72,160 + +0.0 72,161 - +0.7 72,291 + -0.3 72,400 - GFF403 0.18 +0.3 72,450 + GFF403 0.25 -0.1 72,450 + GFF403 0.25 -0.7 72,450 + GFF403 0.25 +0.7 72,483 + GFF403 0.29 +0.9 72,484 - GFF403 0.29 +0.1 72,661 - GFF403 0.52 +0.1 72,676 - GFF403 0.54 +0.3 72,688 - GFF403 0.56 +0.2 72,789 + GFF403 0.69 +0.4 72,790 - GFF403 0.69 +0.3 72,798 + GFF403 0.70 +1.3 72,798 + GFF403 0.70 +0.1 72,799 - GFF403 0.70 -0.4 72,799 - GFF403 0.70 +0.6 73,069 + +0.1 73,210 + GFF404 0.24 +0.1 73,211 - GFF404 0.24 -0.1 73,211 - GFF404 0.24 -0.7 73,228 + GFF404 0.27 +0.9 73,228 + GFF404 0.27 +0.4 73,526 - GFF404 0.72 +0.2 73,567 + GFF404 0.78 -0.1 73,573 + GFF404 0.79 -0.1 73,573 + GFF404 0.79 +0.7 73,573 + GFF404 0.79 -0.8 73,574 - GFF404 0.79 +0.2 73,574 - GFF404 0.79 +0.6 73,574 - GFF404 0.79 +1.4 73,576 + GFF404 0.79 +0.1 73,577 - GFF404 0.79 -0.1 73,577 - GFF404 0.79 +0.1 73,954 + GFF405 0.19 +0.0 73,955 - GFF405 0.19 -0.2
Or see this region's nucleotide sequence