Experiment: Ying_sugar7 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3972 and GFF3973 are separated by 222 nucleotides GFF3973 and GFF3974 are separated by 61 nucleotides GFF3974 and GFF3975 are separated by 204 nucleotides GFF3975 and GFF3976 are separated by 15 nucleotides
GFF3972 - Protein of unknown function DUF81, at 888,755 to 889,603
GFF3972
GFF3973 - hypothetical protein, at 889,826 to 890,209
GFF3973
GFF3974 - hypothetical protein, at 890,271 to 890,510
GFF3974
GFF3975 - hypothetical protein, at 890,715 to 890,849
GFF3975
GFF3976 - Outer membrane vitamin B12 receptor BtuB, at 890,865 to 892,757
GFF3976
Position (kb) 889
890
891 Strain fitness (log2 ratio) -2
-1
0
1
2 at 888.915 kb on + strand, within GFF3972 at 888.915 kb on + strand, within GFF3972 at 888.915 kb on + strand, within GFF3972 at 888.915 kb on + strand, within GFF3972 at 888.916 kb on - strand, within GFF3972 at 888.916 kb on - strand, within GFF3972 at 888.916 kb on - strand, within GFF3972 at 888.916 kb on - strand, within GFF3972 at 888.922 kb on - strand, within GFF3972 at 888.972 kb on + strand, within GFF3972 at 888.972 kb on + strand, within GFF3972 at 888.973 kb on - strand, within GFF3972 at 888.973 kb on - strand, within GFF3972 at 889.112 kb on - strand, within GFF3972 at 889.112 kb on - strand, within GFF3972 at 889.519 kb on + strand at 889.520 kb on - strand at 889.685 kb on + strand at 889.685 kb on + strand at 889.685 kb on + strand at 889.685 kb on + strand at 889.685 kb on + strand at 889.685 kb on + strand at 889.686 kb on - strand at 889.686 kb on - strand at 889.686 kb on - strand at 889.686 kb on - strand at 889.701 kb on + strand at 889.701 kb on + strand at 889.701 kb on + strand at 889.702 kb on - strand at 889.702 kb on - strand at 889.723 kb on + strand at 889.723 kb on + strand at 889.723 kb on + strand at 889.723 kb on + strand at 889.723 kb on + strand at 889.723 kb on + strand at 889.724 kb on - strand at 889.724 kb on - strand at 889.724 kb on - strand at 889.724 kb on - strand at 889.725 kb on + strand at 889.798 kb on - strand at 889.799 kb on + strand at 889.799 kb on + strand at 889.800 kb on - strand at 889.800 kb on - strand at 889.800 kb on - strand at 889.800 kb on - strand at 890.157 kb on + strand, within GFF3973 at 890.157 kb on + strand, within GFF3973 at 890.157 kb on + strand, within GFF3973 at 890.158 kb on - strand, within GFF3973 at 890.158 kb on - strand, within GFF3973 at 890.158 kb on - strand, within GFF3973 at 890.211 kb on + strand at 890.211 kb on + strand at 890.212 kb on - strand at 890.212 kb on - strand at 890.212 kb on - strand at 890.215 kb on + strand at 890.215 kb on + strand at 890.215 kb on + strand at 890.215 kb on + strand at 890.215 kb on + strand at 890.215 kb on + strand at 890.215 kb on + strand at 890.215 kb on + strand at 890.216 kb on - strand at 890.216 kb on - strand at 890.537 kb on + strand at 890.538 kb on - strand at 890.538 kb on - strand at 890.538 kb on - strand at 890.538 kb on - strand at 890.538 kb on - strand at 890.563 kb on + strand at 890.563 kb on + strand at 890.564 kb on - strand at 890.564 kb on - strand at 890.564 kb on - strand at 890.650 kb on + strand at 890.650 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 3 remove 888,915 + GFF3972 0.19 +0.5 888,915 + GFF3972 0.19 -0.4 888,915 + GFF3972 0.19 +0.8 888,915 + GFF3972 0.19 -1.3 888,916 - GFF3972 0.19 -0.3 888,916 - GFF3972 0.19 +0.4 888,916 - GFF3972 0.19 -1.2 888,916 - GFF3972 0.19 -0.0 888,922 - GFF3972 0.20 +0.3 888,972 + GFF3972 0.26 -0.4 888,972 + GFF3972 0.26 +0.1 888,973 - GFF3972 0.26 -0.5 888,973 - GFF3972 0.26 +2.7 889,112 - GFF3972 0.42 -0.2 889,112 - GFF3972 0.42 +0.8 889,519 + -0.6 889,520 - -2.2 889,685 + -0.4 889,685 + -0.6 889,685 + +0.2 889,685 + -0.7 889,685 + -0.5 889,685 + +0.1 889,686 - -0.6 889,686 - -0.3 889,686 - -0.3 889,686 - +0.0 889,701 + +0.0 889,701 + +0.3 889,701 + +0.8 889,702 - -0.2 889,702 - +0.3 889,723 + +0.7 889,723 + -0.5 889,723 + -0.0 889,723 + -2.0 889,723 + +0.0 889,723 + +0.4 889,724 - +1.4 889,724 - +0.0 889,724 - -0.1 889,724 - -0.5 889,725 + -0.3 889,798 - +0.8 889,799 + +0.6 889,799 + -0.1 889,800 - -0.4 889,800 - -0.4 889,800 - +0.0 889,800 - +0.1 890,157 + GFF3973 0.86 +0.7 890,157 + GFF3973 0.86 +1.2 890,157 + GFF3973 0.86 +1.9 890,158 - GFF3973 0.86 +0.4 890,158 - GFF3973 0.86 +1.3 890,158 - GFF3973 0.86 +0.5 890,211 + +1.5 890,211 + +1.3 890,212 - +0.4 890,212 - +0.2 890,212 - -0.1 890,215 + +0.1 890,215 + +0.2 890,215 + -0.7 890,215 + +0.1 890,215 + +0.3 890,215 + +0.4 890,215 + +0.1 890,215 + -0.0 890,216 - +0.4 890,216 - +0.3 890,537 + -0.5 890,538 - -0.4 890,538 - -0.7 890,538 - +0.5 890,538 - -0.3 890,538 - +0.1 890,563 + -0.4 890,563 + -0.2 890,564 - -0.2 890,564 - -0.0 890,564 - -0.6 890,650 + -1.2 890,650 + +1.3
Or see this region's nucleotide sequence