Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3881

Experiment: Ying_sugar7 rep B; time point 3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF3880 and GFF3881 are separated by 167 nucleotidesGFF3881 and GFF3882 are separated by 14 nucleotidesGFF3882 and GFF3883 are separated by 12 nucleotides GFF3880 - Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77), at 794,580 to 795,347 GFF3880 GFF3881 - Lipoprotein NlpD, at 795,515 to 796,339 GFF3881 GFF3882 - Polysaccharide biosynthesis protein WlaX, at 796,354 to 797,139 GFF3882 GFF3883 - 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-), at 797,152 to 798,648 GFF3883 Position (kb) 795 796 797Strain fitness (log2 ratio) -2 -1 0 1at 794.841 kb on + strand, within GFF3880at 794.841 kb on + strand, within GFF3880at 794.842 kb on - strand, within GFF3880at 794.842 kb on - strand, within GFF3880at 794.842 kb on - strand, within GFF3880at 794.842 kb on - strand, within GFF3880at 795.018 kb on + strand, within GFF3880at 795.018 kb on + strand, within GFF3880at 795.019 kb on - strand, within GFF3880at 795.019 kb on - strand, within GFF3880at 795.124 kb on + strand, within GFF3880at 795.142 kb on - strand, within GFF3880at 795.329 kb on - strandat 795.668 kb on + strand, within GFF3881at 795.668 kb on + strand, within GFF3881at 795.669 kb on - strand, within GFF3881at 795.671 kb on + strand, within GFF3881at 795.671 kb on + strand, within GFF3881at 795.671 kb on + strand, within GFF3881at 795.671 kb on + strand, within GFF3881at 795.672 kb on - strand, within GFF3881at 795.672 kb on - strand, within GFF3881at 796.103 kb on + strand, within GFF3881at 796.104 kb on - strand, within GFF3881at 796.104 kb on - strand, within GFF3881at 796.163 kb on + strand, within GFF3881at 796.163 kb on + strand, within GFF3881at 796.164 kb on - strand, within GFF3881at 796.175 kb on + strand, within GFF3881at 796.703 kb on - strand, within GFF3882at 796.738 kb on + strand, within GFF3882at 796.738 kb on + strand, within GFF3882at 796.738 kb on + strand, within GFF3882at 796.739 kb on - strand, within GFF3882at 796.783 kb on + strand, within GFF3882at 796.783 kb on + strand, within GFF3882at 796.783 kb on + strand, within GFF3882at 796.783 kb on + strand, within GFF3882at 796.783 kb on + strand, within GFF3882at 796.783 kb on + strand, within GFF3882at 796.783 kb on + strand, within GFF3882at 796.783 kb on + strand, within GFF3882at 796.783 kb on + strand, within GFF3882at 796.784 kb on - strand, within GFF3882at 796.784 kb on - strand, within GFF3882at 796.784 kb on - strand, within GFF3882at 796.784 kb on - strand, within GFF3882at 796.784 kb on - strand, within GFF3882at 796.784 kb on - strand, within GFF3882at 796.784 kb on - strand, within GFF3882at 796.784 kb on - strand, within GFF3882at 796.796 kb on - strand, within GFF3882at 796.837 kb on + strand, within GFF3882at 796.837 kb on + strand, within GFF3882at 796.837 kb on + strand, within GFF3882at 796.837 kb on + strand, within GFF3882at 796.838 kb on - strand, within GFF3882at 796.838 kb on - strand, within GFF3882at 796.838 kb on - strand, within GFF3882at 796.933 kb on + strand, within GFF3882at 796.934 kb on - strand, within GFF3882at 796.934 kb on - strand, within GFF3882at 796.993 kb on + strand, within GFF3882at 796.993 kb on + strand, within GFF3882at 796.993 kb on + strand, within GFF3882at 796.994 kb on - strand, within GFF3882at 796.994 kb on - strand, within GFF3882at 796.994 kb on - strand, within GFF3882at 796.994 kb on - strand, within GFF3882at 796.994 kb on - strand, within GFF3882at 797.002 kb on + strand, within GFF3882at 797.002 kb on + strand, within GFF3882at 797.003 kb on - strand, within GFF3882at 797.003 kb on - strand, within GFF3882at 797.003 kb on - strand, within GFF3882at 797.003 kb on - strand, within GFF3882at 797.003 kb on - strand, within GFF3882at 797.003 kb on - strand, within GFF3882at 797.048 kb on - strand, within GFF3882at 797.048 kb on - strand, within GFF3882at 797.119 kb on + strandat 797.120 kb on - strandat 797.120 kb on - strandat 797.120 kb on - strandat 797.120 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 3
remove
794,841 + GFF3880 0.34 -0.2
794,841 + GFF3880 0.34 +0.2
794,842 - GFF3880 0.34 -0.1
794,842 - GFF3880 0.34 -0.6
794,842 - GFF3880 0.34 -0.9
794,842 - GFF3880 0.34 -0.8
795,018 + GFF3880 0.57 -0.1
795,018 + GFF3880 0.57 +0.4
795,019 - GFF3880 0.57 +0.0
795,019 - GFF3880 0.57 +0.1
795,124 + GFF3880 0.71 +0.0
795,142 - GFF3880 0.73 -0.2
795,329 - +0.7
795,668 + GFF3881 0.19 -1.2
795,668 + GFF3881 0.19 -0.2
795,669 - GFF3881 0.19 -2.5
795,671 + GFF3881 0.19 -1.3
795,671 + GFF3881 0.19 +0.0
795,671 + GFF3881 0.19 -0.5
795,671 + GFF3881 0.19 -1.5
795,672 - GFF3881 0.19 -1.0
795,672 - GFF3881 0.19 -1.2
796,103 + GFF3881 0.71 -0.9
796,104 - GFF3881 0.71 -1.2
796,104 - GFF3881 0.71 -0.7
796,163 + GFF3881 0.79 -0.2
796,163 + GFF3881 0.79 -0.8
796,164 - GFF3881 0.79 +0.4
796,175 + GFF3881 0.80 +0.5
796,703 - GFF3882 0.44 +0.6
796,738 + GFF3882 0.49 +0.4
796,738 + GFF3882 0.49 +0.0
796,738 + GFF3882 0.49 +0.1
796,739 - GFF3882 0.49 -0.1
796,783 + GFF3882 0.55 -0.4
796,783 + GFF3882 0.55 +0.2
796,783 + GFF3882 0.55 -0.3
796,783 + GFF3882 0.55 -0.2
796,783 + GFF3882 0.55 -0.1
796,783 + GFF3882 0.55 +0.1
796,783 + GFF3882 0.55 +0.8
796,783 + GFF3882 0.55 -0.7
796,783 + GFF3882 0.55 -0.0
796,784 - GFF3882 0.55 -0.9
796,784 - GFF3882 0.55 +0.0
796,784 - GFF3882 0.55 +1.1
796,784 - GFF3882 0.55 -0.2
796,784 - GFF3882 0.55 +0.7
796,784 - GFF3882 0.55 -1.8
796,784 - GFF3882 0.55 +0.7
796,784 - GFF3882 0.55 +0.5
796,796 - GFF3882 0.56 +0.4
796,837 + GFF3882 0.61 +1.6
796,837 + GFF3882 0.61 +0.1
796,837 + GFF3882 0.61 +0.0
796,837 + GFF3882 0.61 +0.2
796,838 - GFF3882 0.62 -0.8
796,838 - GFF3882 0.62 -0.4
796,838 - GFF3882 0.62 -0.3
796,933 + GFF3882 0.74 +0.4
796,934 - GFF3882 0.74 +1.4
796,934 - GFF3882 0.74 +0.1
796,993 + GFF3882 0.81 -0.3
796,993 + GFF3882 0.81 +0.0
796,993 + GFF3882 0.81 -0.1
796,994 - GFF3882 0.81 -0.2
796,994 - GFF3882 0.81 +1.0
796,994 - GFF3882 0.81 +0.1
796,994 - GFF3882 0.81 +0.1
796,994 - GFF3882 0.81 +0.1
797,002 + GFF3882 0.82 -0.7
797,002 + GFF3882 0.82 -0.5
797,003 - GFF3882 0.83 +0.2
797,003 - GFF3882 0.83 -0.2
797,003 - GFF3882 0.83 +0.4
797,003 - GFF3882 0.83 -2.3
797,003 - GFF3882 0.83 +0.1
797,003 - GFF3882 0.83 +0.1
797,048 - GFF3882 0.88 +0.8
797,048 - GFF3882 0.88 -0.4
797,119 + -0.4
797,120 - +0.1
797,120 - +0.1
797,120 - -0.0
797,120 - +0.8

Or see this region's nucleotide sequence