Experiment: Ying_sugar7 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3841 and GFF3842 are separated by 46 nucleotides GFF3842 and GFF3843 are separated by 46 nucleotides GFF3843 and GFF3844 are separated by 83 nucleotides GFF3844 and GFF3845 are separated by 74 nucleotides
GFF3841 - RND efflux system, outer membrane lipoprotein CmeC, at 751,393 to 752,883
GFF3841
GFF3842 - FIG01199081: hypothetical protein, at 752,930 to 753,799
GFF3842
GFF3843 - membrane protein, at 753,846 to 754,724
GFF3843
GFF3844 - Translation elongation factor P, at 754,808 to 755,362
GFF3844
GFF3845 - FIG00537757: hypothetical protein, at 755,437 to 756,522
GFF3845
Position (kb) 753
754
755 Strain fitness (log2 ratio) -2
-1
0
1 at 752.849 kb on - strand at 752.849 kb on - strand at 752.849 kb on - strand at 752.849 kb on - strand at 752.946 kb on + strand at 752.991 kb on + strand at 752.991 kb on + strand at 752.991 kb on + strand at 752.991 kb on + strand at 752.991 kb on + strand at 752.991 kb on + strand at 752.991 kb on + strand at 752.991 kb on + strand at 752.992 kb on - strand at 752.992 kb on - strand at 752.992 kb on - strand at 753.069 kb on + strand, within GFF3842 at 753.070 kb on - strand, within GFF3842 at 753.070 kb on - strand, within GFF3842 at 753.225 kb on + strand, within GFF3842 at 753.258 kb on + strand, within GFF3842 at 753.258 kb on + strand, within GFF3842 at 753.258 kb on + strand, within GFF3842 at 753.258 kb on + strand, within GFF3842 at 753.259 kb on - strand, within GFF3842 at 753.259 kb on - strand, within GFF3842 at 753.259 kb on - strand, within GFF3842 at 753.259 kb on - strand, within GFF3842 at 753.259 kb on - strand, within GFF3842 at 753.411 kb on + strand, within GFF3842 at 753.450 kb on + strand, within GFF3842 at 753.450 kb on + strand, within GFF3842 at 753.450 kb on + strand, within GFF3842 at 753.451 kb on - strand, within GFF3842 at 753.451 kb on - strand, within GFF3842 at 753.451 kb on - strand, within GFF3842 at 753.451 kb on - strand, within GFF3842 at 753.453 kb on + strand, within GFF3842 at 753.453 kb on + strand, within GFF3842 at 753.453 kb on + strand, within GFF3842 at 753.454 kb on - strand, within GFF3842 at 753.454 kb on - strand, within GFF3842 at 753.454 kb on - strand, within GFF3842 at 753.454 kb on - strand, within GFF3842 at 753.454 kb on - strand, within GFF3842 at 753.454 kb on - strand, within GFF3842 at 754.579 kb on + strand, within GFF3843 at 754.579 kb on + strand, within GFF3843 at 754.579 kb on + strand, within GFF3843 at 754.579 kb on + strand, within GFF3843 at 754.580 kb on - strand, within GFF3843 at 754.580 kb on - strand, within GFF3843 at 754.654 kb on + strand at 754.654 kb on + strand at 754.655 kb on - strand at 754.655 kb on - strand at 755.362 kb on + strand at 755.363 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 3 remove 752,849 - -0.6 752,849 - +0.6 752,849 - +0.4 752,849 - -0.5 752,946 + -1.0 752,991 + -0.1 752,991 + +0.6 752,991 + +0.4 752,991 + +0.0 752,991 + -0.8 752,991 + +0.8 752,991 + +1.1 752,991 + +0.5 752,992 - -0.5 752,992 - -0.0 752,992 - -0.3 753,069 + GFF3842 0.16 -0.7 753,070 - GFF3842 0.16 +0.0 753,070 - GFF3842 0.16 +0.3 753,225 + GFF3842 0.34 +0.2 753,258 + GFF3842 0.38 -0.3 753,258 + GFF3842 0.38 -0.2 753,258 + GFF3842 0.38 +0.1 753,258 + GFF3842 0.38 +1.0 753,259 - GFF3842 0.38 -0.5 753,259 - GFF3842 0.38 -0.0 753,259 - GFF3842 0.38 +0.0 753,259 - GFF3842 0.38 -0.2 753,259 - GFF3842 0.38 -0.2 753,411 + GFF3842 0.55 +0.0 753,450 + GFF3842 0.60 -0.8 753,450 + GFF3842 0.60 -0.3 753,450 + GFF3842 0.60 -0.1 753,451 - GFF3842 0.60 -0.3 753,451 - GFF3842 0.60 -0.2 753,451 - GFF3842 0.60 +0.5 753,451 - GFF3842 0.60 -0.2 753,453 + GFF3842 0.60 +1.0 753,453 + GFF3842 0.60 -0.3 753,453 + GFF3842 0.60 +0.7 753,454 - GFF3842 0.60 -0.1 753,454 - GFF3842 0.60 -1.8 753,454 - GFF3842 0.60 -0.2 753,454 - GFF3842 0.60 -0.2 753,454 - GFF3842 0.60 -1.2 753,454 - GFF3842 0.60 -0.5 754,579 + GFF3843 0.83 +0.9 754,579 + GFF3843 0.83 +0.2 754,579 + GFF3843 0.83 +0.8 754,579 + GFF3843 0.83 +0.4 754,580 - GFF3843 0.84 +1.2 754,580 - GFF3843 0.84 -0.5 754,654 + +0.0 754,654 + -0.2 754,655 - -0.1 754,655 - +0.8 755,362 + -2.0 755,363 - -1.6
Or see this region's nucleotide sequence