Experiment: Ying_sugar7 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3820 and GFF3821 are separated by 81 nucleotides
GFF3820 - Adenylate cyclase (EC 4.6.1.1), at 722,894 to 724,270
GFF3820
GFF3821 - hypothetical protein, at 724,352 to 725,218
GFF3821
Position (kb) 724
725
726 Strain fitness (log2 ratio) -2
-1
0
1
2 at 723.391 kb on + strand, within GFF3820 at 723.392 kb on - strand, within GFF3820 at 723.434 kb on + strand, within GFF3820 at 724.019 kb on + strand, within GFF3820 at 724.020 kb on - strand, within GFF3820 at 724.020 kb on - strand, within GFF3820 at 724.020 kb on - strand, within GFF3820 at 724.049 kb on + strand, within GFF3820 at 724.050 kb on - strand, within GFF3820 at 724.050 kb on - strand, within GFF3820 at 724.050 kb on - strand, within GFF3820 at 724.169 kb on + strand at 724.170 kb on - strand at 724.268 kb on + strand at 724.268 kb on + strand at 724.268 kb on + strand at 724.508 kb on + strand, within GFF3821 at 724.508 kb on + strand, within GFF3821 at 724.509 kb on - strand, within GFF3821 at 724.509 kb on - strand, within GFF3821 at 724.509 kb on - strand, within GFF3821 at 724.509 kb on - strand, within GFF3821 at 724.509 kb on - strand, within GFF3821 at 724.509 kb on - strand, within GFF3821 at 724.553 kb on + strand, within GFF3821 at 724.553 kb on + strand, within GFF3821 at 724.553 kb on + strand, within GFF3821 at 724.553 kb on + strand, within GFF3821 at 724.553 kb on + strand, within GFF3821 at 724.553 kb on + strand, within GFF3821 at 724.553 kb on + strand, within GFF3821 at 724.554 kb on - strand, within GFF3821 at 724.554 kb on - strand, within GFF3821 at 724.554 kb on - strand, within GFF3821 at 724.554 kb on - strand, within GFF3821 at 724.598 kb on + strand, within GFF3821 at 724.599 kb on - strand, within GFF3821 at 724.610 kb on + strand, within GFF3821 at 725.038 kb on - strand, within GFF3821 at 725.090 kb on + strand, within GFF3821 at 725.090 kb on + strand, within GFF3821 at 725.090 kb on + strand, within GFF3821 at 725.091 kb on - strand, within GFF3821 at 725.128 kb on - strand, within GFF3821 at 725.128 kb on - strand, within GFF3821 at 725.128 kb on - strand, within GFF3821 at 725.153 kb on - strand at 725.225 kb on + strand at 725.225 kb on + strand at 725.225 kb on + strand at 725.225 kb on + strand at 725.225 kb on + strand at 725.225 kb on + strand at 725.226 kb on - strand at 725.226 kb on - strand at 725.226 kb on - strand at 725.269 kb on + strand at 725.269 kb on + strand at 725.269 kb on + strand at 725.269 kb on + strand at 725.269 kb on + strand at 725.270 kb on - strand at 725.270 kb on - strand at 725.270 kb on - strand at 725.270 kb on - strand at 725.270 kb on - strand at 725.299 kb on + strand at 725.299 kb on + strand at 725.299 kb on + strand at 725.299 kb on + strand at 725.299 kb on + strand at 725.299 kb on + strand at 725.300 kb on - strand at 725.381 kb on + strand at 725.411 kb on + strand at 725.412 kb on - strand at 725.555 kb on + strand at 725.555 kb on + strand at 725.555 kb on + strand at 725.555 kb on + strand at 725.556 kb on - strand at 725.627 kb on + strand at 725.628 kb on - strand at 725.714 kb on + strand at 725.714 kb on + strand at 725.715 kb on - strand at 725.715 kb on - strand at 725.715 kb on - strand at 725.715 kb on - strand at 725.748 kb on - strand at 725.830 kb on - strand at 725.874 kb on - strand at 725.925 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 3 remove 723,391 + GFF3820 0.36 -1.0 723,392 - GFF3820 0.36 +0.7 723,434 + GFF3820 0.39 +0.1 724,019 + GFF3820 0.82 -0.8 724,020 - GFF3820 0.82 +0.4 724,020 - GFF3820 0.82 -0.2 724,020 - GFF3820 0.82 +0.2 724,049 + GFF3820 0.84 -0.0 724,050 - GFF3820 0.84 -0.2 724,050 - GFF3820 0.84 +0.2 724,050 - GFF3820 0.84 +1.8 724,169 + -0.7 724,170 - +0.5 724,268 + -1.2 724,268 + -2.0 724,268 + -0.7 724,508 + GFF3821 0.18 -0.1 724,508 + GFF3821 0.18 -0.1 724,509 - GFF3821 0.18 -0.0 724,509 - GFF3821 0.18 +0.6 724,509 - GFF3821 0.18 +1.2 724,509 - GFF3821 0.18 +0.9 724,509 - GFF3821 0.18 +0.3 724,509 - GFF3821 0.18 +0.4 724,553 + GFF3821 0.23 -0.5 724,553 + GFF3821 0.23 +0.5 724,553 + GFF3821 0.23 +0.8 724,553 + GFF3821 0.23 -0.2 724,553 + GFF3821 0.23 +0.5 724,553 + GFF3821 0.23 +0.5 724,553 + GFF3821 0.23 -0.4 724,554 - GFF3821 0.23 +0.6 724,554 - GFF3821 0.23 -0.6 724,554 - GFF3821 0.23 -1.5 724,554 - GFF3821 0.23 +0.1 724,598 + GFF3821 0.28 -0.6 724,599 - GFF3821 0.28 -0.0 724,610 + GFF3821 0.30 -0.3 725,038 - GFF3821 0.79 +1.2 725,090 + GFF3821 0.85 +0.5 725,090 + GFF3821 0.85 -0.4 725,090 + GFF3821 0.85 -0.6 725,091 - GFF3821 0.85 +0.5 725,128 - GFF3821 0.90 -2.2 725,128 - GFF3821 0.90 -0.0 725,128 - GFF3821 0.90 -0.0 725,153 - -0.2 725,225 + -0.2 725,225 + -0.2 725,225 + -0.7 725,225 + +0.2 725,225 + +1.1 725,225 + +0.1 725,226 - -0.1 725,226 - +0.3 725,226 - +0.1 725,269 + +0.6 725,269 + +0.2 725,269 + +0.0 725,269 + +0.5 725,269 + +0.2 725,270 - +0.8 725,270 - -0.3 725,270 - +0.4 725,270 - -0.2 725,270 - -0.6 725,299 + -0.3 725,299 + +0.5 725,299 + +1.1 725,299 + -0.1 725,299 + +0.4 725,299 + +0.2 725,300 - +0.2 725,381 + +1.6 725,411 + +0.1 725,412 - -1.5 725,555 + +1.3 725,555 + -0.2 725,555 + -0.4 725,555 + +0.2 725,556 - -0.3 725,627 + -0.5 725,628 - +0.0 725,714 + +0.3 725,714 + +0.8 725,715 - +0.5 725,715 - -0.3 725,715 - -1.3 725,715 - -0.3 725,748 - +0.7 725,830 - -0.5 725,874 - -1.1 725,925 + -1.5
Or see this region's nucleotide sequence